Strain Fitness in Xanthobacter sp. DMC5 around GFF2632

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2631 and GFF2632 are separated by 157 nucleotidesGFF2632 and GFF2633 are separated by 288 nucleotides GFF2631 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 316,449 to 317,309 GFF2631 GFF2632 - hypothetical protein, at 317,467 to 318,333 GFF2632 GFF2633 - putative L,D-transpeptidase YbiS, at 318,622 to 319,278 GFF2633 Position (kb) 317 318 319Strain fitness (log2 ratio) -3 -2 -1 0 1at 316.715 kb on - strand, within GFF2631at 316.715 kb on - strand, within GFF2631at 316.870 kb on + strand, within GFF2631at 316.871 kb on - strand, within GFF2631at 316.871 kb on - strand, within GFF2631at 317.014 kb on + strand, within GFF2631at 317.265 kb on + strandat 317.265 kb on + strandat 317.265 kb on + strandat 317.399 kb on + strandat 317.399 kb on + strandat 317.399 kb on + strandat 317.400 kb on - strandat 317.400 kb on - strandat 317.400 kb on - strandat 317.400 kb on - strandat 317.400 kb on - strandat 317.430 kb on + strandat 317.430 kb on + strandat 317.430 kb on + strandat 317.431 kb on - strandat 317.431 kb on - strandat 317.431 kb on - strandat 317.431 kb on - strandat 317.431 kb on - strandat 317.436 kb on - strandat 317.436 kb on - strandat 317.501 kb on + strandat 317.501 kb on + strandat 317.546 kb on + strandat 317.546 kb on + strandat 317.547 kb on - strandat 317.646 kb on - strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.748 kb on + strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.749 kb on - strand, within GFF2632at 317.750 kb on + strand, within GFF2632at 317.750 kb on + strand, within GFF2632at 317.751 kb on - strand, within GFF2632at 317.751 kb on - strand, within GFF2632at 317.776 kb on + strand, within GFF2632at 317.777 kb on - strand, within GFF2632at 317.803 kb on + strand, within GFF2632at 317.803 kb on + strand, within GFF2632at 317.804 kb on - strand, within GFF2632at 317.951 kb on - strand, within GFF2632at 317.960 kb on - strand, within GFF2632at 317.960 kb on - strand, within GFF2632at 317.989 kb on + strand, within GFF2632at 317.989 kb on + strand, within GFF2632at 317.989 kb on + strand, within GFF2632at 317.989 kb on + strand, within GFF2632at 317.990 kb on - strand, within GFF2632at 317.990 kb on - strand, within GFF2632at 317.990 kb on - strand, within GFF2632at 317.990 kb on - strand, within GFF2632at 318.232 kb on - strand, within GFF2632at 318.244 kb on + strand, within GFF2632at 318.244 kb on + strand, within GFF2632at 318.244 kb on + strand, within GFF2632at 318.245 kb on - strand, within GFF2632at 318.245 kb on - strand, within GFF2632at 318.287 kb on + strandat 318.307 kb on - strandat 318.307 kb on - strandat 318.411 kb on - strandat 318.411 kb on - strandat 318.411 kb on - strandat 318.512 kb on + strandat 318.512 kb on + strandat 318.513 kb on - strandat 318.557 kb on - strandat 318.575 kb on - strandat 318.597 kb on + strandat 318.597 kb on + strandat 318.598 kb on - strandat 318.598 kb on - strandat 318.600 kb on + strandat 318.658 kb on + strandat 318.668 kb on + strandat 318.669 kb on - strandat 318.681 kb on + strandat 318.682 kb on - strandat 318.734 kb on + strand, within GFF2633at 318.768 kb on + strand, within GFF2633at 318.768 kb on + strand, within GFF2633at 318.769 kb on - strand, within GFF2633at 318.786 kb on - strand, within GFF2633at 318.791 kb on + strand, within GFF2633at 318.791 kb on + strand, within GFF2633at 318.854 kb on + strand, within GFF2633at 318.855 kb on - strand, within GFF2633at 318.855 kb on - strand, within GFF2633at 318.855 kb on - strand, within GFF2633at 318.855 kb on - strand, within GFF2633at 319.010 kb on + strand, within GFF2633at 319.010 kb on + strand, within GFF2633at 319.010 kb on + strand, within GFF2633at 319.010 kb on + strand, within GFF2633at 319.010 kb on + strand, within GFF2633at 319.010 kb on + strand, within GFF2633at 319.011 kb on - strand, within GFF2633at 319.011 kb on - strand, within GFF2633at 319.011 kb on - strand, within GFF2633at 319.011 kb on - strand, within GFF2633at 319.016 kb on + strand, within GFF2633at 319.016 kb on + strand, within GFF2633at 319.016 kb on + strand, within GFF2633at 319.017 kb on - strand, within GFF2633at 319.017 kb on - strand, within GFF2633at 319.017 kb on - strand, within GFF2633at 319.068 kb on - strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.154 kb on + strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.155 kb on - strand, within GFF2633at 319.200 kb on + strand, within GFF2633at 319.200 kb on + strand, within GFF2633

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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316,715 - GFF2631 0.31 -0.9
316,715 - GFF2631 0.31 -0.7
316,870 + GFF2631 0.49 +1.7
316,871 - GFF2631 0.49 +0.2
316,871 - GFF2631 0.49 -0.2
317,014 + GFF2631 0.66 -0.1
317,265 + -0.7
317,265 + -0.5
317,265 + +0.5
317,399 + +0.1
317,399 + -0.0
317,399 + -0.4
317,400 - -0.0
317,400 - -0.2
317,400 - +0.4
317,400 - -0.0
317,400 - -0.5
317,430 + -0.4
317,430 + +0.5
317,430 + -1.1
317,431 - -0.1
317,431 - +0.6
317,431 - -0.6
317,431 - -0.6
317,431 - -1.5
317,436 - +0.3
317,436 - -0.2
317,501 + +0.1
317,501 + -0.2
317,546 + -0.5
317,546 + -0.1
317,547 - -0.1
317,646 - GFF2632 0.21 -0.0
317,748 + GFF2632 0.32 -0.7
317,748 + GFF2632 0.32 +0.4
317,748 + GFF2632 0.32 +0.0
317,748 + GFF2632 0.32 -0.5
317,748 + GFF2632 0.32 -0.0
317,748 + GFF2632 0.32 -1.0
317,748 + GFF2632 0.32 +0.1
317,749 - GFF2632 0.33 +0.3
317,749 - GFF2632 0.33 -1.0
317,749 - GFF2632 0.33 +0.4
317,749 - GFF2632 0.33 -1.1
317,749 - GFF2632 0.33 -1.0
317,749 - GFF2632 0.33 +0.5
317,749 - GFF2632 0.33 -0.4
317,749 - GFF2632 0.33 +0.2
317,749 - GFF2632 0.33 +0.3
317,749 - GFF2632 0.33 +0.7
317,749 - GFF2632 0.33 -0.6
317,749 - GFF2632 0.33 -0.4
317,749 - GFF2632 0.33 +0.6
317,750 + GFF2632 0.33 -1.1
317,750 + GFF2632 0.33 -0.2
317,751 - GFF2632 0.33 -0.1
317,751 - GFF2632 0.33 -0.1
317,776 + GFF2632 0.36 +0.7
317,777 - GFF2632 0.36 +1.3
317,803 + GFF2632 0.39 +0.9
317,803 + GFF2632 0.39 -0.3
317,804 - GFF2632 0.39 +0.5
317,951 - GFF2632 0.56 +0.3
317,960 - GFF2632 0.57 +0.0
317,960 - GFF2632 0.57 -0.1
317,989 + GFF2632 0.60 -0.6
317,989 + GFF2632 0.60 +0.5
317,989 + GFF2632 0.60 +0.0
317,989 + GFF2632 0.60 +1.2
317,990 - GFF2632 0.60 +0.5
317,990 - GFF2632 0.60 +0.5
317,990 - GFF2632 0.60 -1.3
317,990 - GFF2632 0.60 -0.2
318,232 - GFF2632 0.88 +0.3
318,244 + GFF2632 0.90 +0.1
318,244 + GFF2632 0.90 -0.7
318,244 + GFF2632 0.90 +0.9
318,245 - GFF2632 0.90 +0.9
318,245 - GFF2632 0.90 +0.3
318,287 + -0.6
318,307 - -0.1
318,307 - +0.1
318,411 - +0.2
318,411 - +0.7
318,411 - -1.6
318,512 + +0.1
318,512 + -0.2
318,513 - -1.9
318,557 - -0.6
318,575 - -0.1
318,597 + +0.0
318,597 + -0.7
318,598 - +0.4
318,598 - +0.9
318,600 + +0.0
318,658 + -0.1
318,668 + -0.2
318,669 - +1.3
318,681 + -0.2
318,682 - +0.2
318,734 + GFF2633 0.17 +0.8
318,768 + GFF2633 0.22 -0.9
318,768 + GFF2633 0.22 +0.2
318,769 - GFF2633 0.22 -1.7
318,786 - GFF2633 0.25 -1.0
318,791 + GFF2633 0.26 +0.5
318,791 + GFF2633 0.26 +0.9
318,854 + GFF2633 0.35 -0.6
318,855 - GFF2633 0.35 -0.3
318,855 - GFF2633 0.35 -1.2
318,855 - GFF2633 0.35 -0.9
318,855 - GFF2633 0.35 +0.3
319,010 + GFF2633 0.59 -0.8
319,010 + GFF2633 0.59 -0.1
319,010 + GFF2633 0.59 -2.5
319,010 + GFF2633 0.59 -1.0
319,010 + GFF2633 0.59 +0.6
319,010 + GFF2633 0.59 +1.3
319,011 - GFF2633 0.59 -2.8
319,011 - GFF2633 0.59 -1.8
319,011 - GFF2633 0.59 -0.1
319,011 - GFF2633 0.59 -0.1
319,016 + GFF2633 0.60 -1.0
319,016 + GFF2633 0.60 +0.9
319,016 + GFF2633 0.60 +0.3
319,017 - GFF2633 0.60 -0.8
319,017 - GFF2633 0.60 -0.2
319,017 - GFF2633 0.60 +1.2
319,068 - GFF2633 0.68 +0.1
319,154 + GFF2633 0.81 +0.3
319,154 + GFF2633 0.81 -0.8
319,154 + GFF2633 0.81 +0.5
319,154 + GFF2633 0.81 -0.0
319,154 + GFF2633 0.81 -0.2
319,154 + GFF2633 0.81 -0.2
319,154 + GFF2633 0.81 -1.1
319,154 + GFF2633 0.81 -1.8
319,154 + GFF2633 0.81 -2.0
319,154 + GFF2633 0.81 -0.6
319,155 - GFF2633 0.81 -0.4
319,155 - GFF2633 0.81 -0.9
319,155 - GFF2633 0.81 -2.3
319,155 - GFF2633 0.81 -0.2
319,155 - GFF2633 0.81 -0.2
319,155 - GFF2633 0.81 +0.1
319,155 - GFF2633 0.81 -0.7
319,155 - GFF2633 0.81 -0.5
319,155 - GFF2633 0.81 +0.5
319,155 - GFF2633 0.81 +1.0
319,200 + GFF2633 0.88 -1.4
319,200 + GFF2633 0.88 +0.0

Or see this region's nucleotide sequence