Strain Fitness in Xanthobacter sp. DMC5 around GFF2626

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2625 and GFF2626 are separated by 337 nucleotidesGFF2626 and GFF2627 are separated by 36 nucleotidesGFF2627 and GFF2628 overlap by 14 nucleotides GFF2625 - Imidazolonepropionase, at 310,545 to 312,389 GFF2625 GFF2626 - L-carnitine dehydrogenase, at 312,727 to 313,020 GFF2626 GFF2627 - L-carnitine dehydrogenase, at 313,057 to 313,440 GFF2627 GFF2628 - Gluconate 5-dehydrogenase, at 313,427 to 314,206 GFF2628 Position (kb) 312 313 314Strain fitness (log2 ratio) -2 -1 0 1 2at 311.943 kb on + strand, within GFF2625at 311.944 kb on - strand, within GFF2625at 311.956 kb on - strand, within GFF2625at 311.956 kb on - strand, within GFF2625at 311.967 kb on + strand, within GFF2625at 311.968 kb on - strand, within GFF2625at 311.968 kb on - strand, within GFF2625at 311.968 kb on - strand, within GFF2625at 311.969 kb on + strand, within GFF2625at 311.969 kb on + strand, within GFF2625at 311.969 kb on + strand, within GFF2625at 311.969 kb on + strand, within GFF2625at 311.969 kb on + strand, within GFF2625at 311.969 kb on + strand, within GFF2625at 311.969 kb on + strand, within GFF2625at 311.970 kb on - strand, within GFF2625at 311.970 kb on - strand, within GFF2625at 311.970 kb on - strand, within GFF2625at 311.970 kb on - strand, within GFF2625at 311.970 kb on - strand, within GFF2625at 311.970 kb on - strand, within GFF2625at 311.970 kb on - strand, within GFF2625at 312.009 kb on + strand, within GFF2625at 312.009 kb on + strand, within GFF2625at 312.009 kb on + strand, within GFF2625at 312.009 kb on + strand, within GFF2625at 312.010 kb on - strand, within GFF2625at 312.010 kb on - strand, within GFF2625at 312.010 kb on - strand, within GFF2625at 312.015 kb on + strand, within GFF2625at 312.201 kb on + strand, within GFF2625at 312.201 kb on + strand, within GFF2625at 312.203 kb on + strand, within GFF2625at 312.219 kb on + strandat 312.220 kb on - strandat 312.293 kb on + strandat 312.293 kb on + strandat 312.293 kb on + strandat 312.293 kb on + strandat 312.294 kb on - strandat 312.294 kb on - strandat 312.294 kb on - strandat 312.344 kb on + strandat 312.344 kb on + strandat 312.345 kb on - strandat 312.365 kb on + strandat 312.365 kb on + strandat 312.365 kb on + strandat 312.366 kb on - strandat 312.374 kb on + strandat 312.375 kb on - strandat 312.375 kb on - strandat 312.375 kb on - strandat 312.375 kb on - strandat 312.375 kb on - strandat 312.375 kb on - strandat 312.395 kb on + strandat 312.571 kb on + strandat 312.745 kb on + strandat 312.745 kb on + strandat 312.745 kb on + strandat 312.745 kb on + strandat 312.745 kb on + strandat 312.746 kb on - strandat 312.746 kb on - strandat 312.746 kb on - strandat 312.746 kb on - strandat 312.746 kb on - strandat 312.746 kb on - strandat 312.746 kb on - strandat 312.746 kb on - strandat 313.105 kb on + strand, within GFF2627at 313.105 kb on + strand, within GFF2627at 313.105 kb on + strand, within GFF2627at 313.105 kb on + strand, within GFF2627at 313.106 kb on - strand, within GFF2627at 313.166 kb on + strand, within GFF2627at 313.167 kb on - strand, within GFF2627at 313.212 kb on + strand, within GFF2627at 313.212 kb on + strand, within GFF2627at 313.213 kb on - strand, within GFF2627at 313.213 kb on - strand, within GFF2627at 313.231 kb on + strand, within GFF2627at 313.232 kb on - strand, within GFF2627at 313.256 kb on - strand, within GFF2627at 313.256 kb on - strand, within GFF2627at 313.256 kb on - strand, within GFF2627at 313.256 kb on - strand, within GFF2627at 313.606 kb on + strand, within GFF2628at 313.606 kb on + strand, within GFF2628at 313.607 kb on - strand, within GFF2628at 313.607 kb on - strand, within GFF2628at 313.913 kb on + strand, within GFF2628at 313.913 kb on + strand, within GFF2628at 313.914 kb on - strand, within GFF2628at 313.995 kb on + strand, within GFF2628at 313.996 kb on + strand, within GFF2628at 313.996 kb on + strand, within GFF2628at 313.996 kb on + strand, within GFF2628at 313.996 kb on + strand, within GFF2628at 313.997 kb on - strand, within GFF2628at 313.997 kb on - strand, within GFF2628

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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311,943 + GFF2625 0.76 +0.3
311,944 - GFF2625 0.76 -0.7
311,956 - GFF2625 0.76 -0.6
311,956 - GFF2625 0.76 +0.9
311,967 + GFF2625 0.77 +0.3
311,968 - GFF2625 0.77 +0.2
311,968 - GFF2625 0.77 +2.7
311,968 - GFF2625 0.77 +0.9
311,969 + GFF2625 0.77 +1.0
311,969 + GFF2625 0.77 +0.5
311,969 + GFF2625 0.77 +1.2
311,969 + GFF2625 0.77 -0.7
311,969 + GFF2625 0.77 +0.1
311,969 + GFF2625 0.77 -1.2
311,969 + GFF2625 0.77 -0.1
311,970 - GFF2625 0.77 -1.2
311,970 - GFF2625 0.77 +0.5
311,970 - GFF2625 0.77 +0.0
311,970 - GFF2625 0.77 -0.2
311,970 - GFF2625 0.77 -1.0
311,970 - GFF2625 0.77 -0.1
311,970 - GFF2625 0.77 +1.3
312,009 + GFF2625 0.79 -0.7
312,009 + GFF2625 0.79 -0.9
312,009 + GFF2625 0.79 -0.2
312,009 + GFF2625 0.79 +1.2
312,010 - GFF2625 0.79 +1.1
312,010 - GFF2625 0.79 +0.2
312,010 - GFF2625 0.79 +0.2
312,015 + GFF2625 0.80 -1.0
312,201 + GFF2625 0.90 -1.7
312,201 + GFF2625 0.90 -1.5
312,203 + GFF2625 0.90 -0.2
312,219 + +0.3
312,220 - -0.4
312,293 + -0.5
312,293 + -0.6
312,293 + -0.7
312,293 + +0.0
312,294 - +0.2
312,294 - +0.6
312,294 - +0.3
312,344 + -0.6
312,344 + -1.4
312,345 - -0.4
312,365 + -0.3
312,365 + +0.5
312,365 + -0.9
312,366 - -1.4
312,374 + -0.2
312,375 - -0.8
312,375 - -0.2
312,375 - +0.0
312,375 - +0.4
312,375 - -0.8
312,375 - +0.7
312,395 + +0.5
312,571 + -0.7
312,745 + +0.5
312,745 + -0.4
312,745 + -0.7
312,745 + +0.4
312,745 + -1.0
312,746 - -0.4
312,746 - +0.0
312,746 - +0.6
312,746 - -0.5
312,746 - -1.3
312,746 - -0.6
312,746 - +0.1
312,746 - -0.9
313,105 + GFF2627 0.12 -0.6
313,105 + GFF2627 0.12 +0.8
313,105 + GFF2627 0.12 -1.1
313,105 + GFF2627 0.12 -0.5
313,106 - GFF2627 0.13 +1.0
313,166 + GFF2627 0.28 -0.4
313,167 - GFF2627 0.29 +0.1
313,212 + GFF2627 0.40 +0.4
313,212 + GFF2627 0.40 +0.8
313,213 - GFF2627 0.41 +0.2
313,213 - GFF2627 0.41 -0.4
313,231 + GFF2627 0.45 -2.7
313,232 - GFF2627 0.46 -0.2
313,256 - GFF2627 0.52 +0.7
313,256 - GFF2627 0.52 -1.5
313,256 - GFF2627 0.52 +0.4
313,256 - GFF2627 0.52 -0.5
313,606 + GFF2628 0.23 -0.8
313,606 + GFF2628 0.23 -0.2
313,607 - GFF2628 0.23 +0.9
313,607 - GFF2628 0.23 -0.2
313,913 + GFF2628 0.62 -1.0
313,913 + GFF2628 0.62 +0.1
313,914 - GFF2628 0.62 +0.0
313,995 + GFF2628 0.73 -0.0
313,996 + GFF2628 0.73 -0.1
313,996 + GFF2628 0.73 +0.2
313,996 + GFF2628 0.73 +1.2
313,996 + GFF2628 0.73 +0.3
313,997 - GFF2628 0.73 -0.6
313,997 - GFF2628 0.73 +0.3

Or see this region's nucleotide sequence