Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2622 and GFF2623 are separated by 117 nucleotides GFF2623 and GFF2624 are separated by 356 nucleotides GFF2624 and GFF2625 are separated by 484 nucleotides
GFF2622 - hypothetical protein, at 307,134 to 308,654
GFF2622
GFF2623 - hypothetical protein, at 308,772 to 309,563
GFF2623
GFF2624 - hypothetical protein, at 309,920 to 310,060
GFF2624
GFF2625 - Imidazolonepropionase, at 310,545 to 312,389
GFF2625
Position (kb) 308
309
310 Strain fitness (log2 ratio) -2
-1
0
1 at 307.796 kb on + strand, within GFF2622 at 307.797 kb on - strand, within GFF2622 at 307.886 kb on + strand, within GFF2622 at 307.886 kb on + strand, within GFF2622 at 307.899 kb on + strand, within GFF2622 at 307.899 kb on + strand, within GFF2622 at 307.899 kb on + strand, within GFF2622 at 307.900 kb on - strand, within GFF2622 at 307.900 kb on - strand, within GFF2622 at 307.900 kb on - strand, within GFF2622 at 307.939 kb on - strand, within GFF2622 at 307.948 kb on + strand, within GFF2622 at 307.949 kb on - strand, within GFF2622 at 307.949 kb on - strand, within GFF2622 at 308.065 kb on + strand, within GFF2622 at 308.065 kb on + strand, within GFF2622 at 308.066 kb on - strand, within GFF2622 at 308.066 kb on - strand, within GFF2622 at 308.066 kb on - strand, within GFF2622 at 308.120 kb on + strand, within GFF2622 at 308.295 kb on + strand, within GFF2622 at 308.340 kb on + strand, within GFF2622 at 308.341 kb on - strand, within GFF2622 at 308.341 kb on - strand, within GFF2622 at 308.413 kb on + strand, within GFF2622 at 308.413 kb on + strand, within GFF2622 at 308.413 kb on + strand, within GFF2622 at 308.413 kb on + strand, within GFF2622 at 308.414 kb on - strand, within GFF2622 at 308.461 kb on + strand, within GFF2622 at 308.471 kb on - strand, within GFF2622 at 308.471 kb on - strand, within GFF2622 at 308.471 kb on - strand, within GFF2622 at 308.556 kb on + strand at 308.556 kb on + strand at 308.557 kb on - strand at 308.653 kb on - strand at 308.773 kb on + strand at 308.773 kb on + strand at 308.773 kb on + strand at 308.773 kb on + strand at 308.773 kb on + strand at 308.774 kb on - strand at 308.774 kb on - strand at 308.774 kb on - strand at 308.774 kb on - strand at 308.774 kb on - strand at 308.774 kb on - strand at 308.839 kb on + strand at 308.839 kb on + strand at 308.840 kb on - strand at 308.935 kb on + strand, within GFF2623 at 308.935 kb on + strand, within GFF2623 at 308.935 kb on + strand, within GFF2623 at 308.935 kb on + strand, within GFF2623 at 308.935 kb on + strand, within GFF2623 at 308.935 kb on + strand, within GFF2623 at 308.936 kb on - strand, within GFF2623 at 308.936 kb on - strand, within GFF2623 at 308.936 kb on - strand, within GFF2623 at 308.936 kb on - strand, within GFF2623 at 308.992 kb on + strand, within GFF2623 at 308.993 kb on - strand, within GFF2623 at 309.058 kb on - strand, within GFF2623 at 309.120 kb on + strand, within GFF2623 at 309.120 kb on + strand, within GFF2623 at 309.120 kb on + strand, within GFF2623 at 309.120 kb on + strand, within GFF2623 at 309.121 kb on - strand, within GFF2623 at 309.121 kb on - strand, within GFF2623 at 309.198 kb on + strand, within GFF2623 at 309.316 kb on + strand, within GFF2623 at 309.316 kb on + strand, within GFF2623 at 309.316 kb on + strand, within GFF2623 at 309.316 kb on + strand, within GFF2623 at 309.317 kb on - strand, within GFF2623 at 309.499 kb on + strand at 309.499 kb on + strand at 309.499 kb on + strand at 309.499 kb on + strand at 309.499 kb on + strand at 309.500 kb on - strand at 309.500 kb on - strand at 309.500 kb on - strand at 309.500 kb on - strand at 309.530 kb on + strand at 309.530 kb on + strand at 309.531 kb on - strand at 309.531 kb on - strand at 309.531 kb on - strand at 309.533 kb on + strand at 309.533 kb on + strand at 309.534 kb on - strand at 309.534 kb on - strand at 309.570 kb on + strand at 309.570 kb on + strand at 309.570 kb on + strand at 309.571 kb on - strand at 309.571 kb on - strand at 309.571 kb on - strand at 309.571 kb on - strand at 309.571 kb on - strand at 309.571 kb on - strand at 309.571 kb on - strand at 309.571 kb on - strand at 309.694 kb on + strand at 309.694 kb on + strand at 309.694 kb on + strand at 309.694 kb on + strand at 309.694 kb on + strand at 309.694 kb on + strand at 309.695 kb on - strand at 309.769 kb on + strand at 309.770 kb on - strand at 309.770 kb on - strand at 309.789 kb on + strand at 309.816 kb on + strand at 309.816 kb on + strand at 309.817 kb on - strand at 309.817 kb on - strand at 309.881 kb on + strand at 309.881 kb on + strand at 309.882 kb on - strand at 309.882 kb on - strand at 309.882 kb on - strand at 309.882 kb on - strand at 309.970 kb on + strand, within GFF2624 at 309.970 kb on + strand, within GFF2624 at 309.970 kb on + strand, within GFF2624 at 309.970 kb on + strand, within GFF2624 at 309.970 kb on + strand, within GFF2624 at 309.970 kb on + strand, within GFF2624 at 309.971 kb on - strand, within GFF2624 at 309.971 kb on - strand, within GFF2624 at 309.971 kb on - strand, within GFF2624 at 309.992 kb on + strand, within GFF2624 at 309.993 kb on - strand, within GFF2624 at 310.011 kb on + strand, within GFF2624 at 310.011 kb on + strand, within GFF2624 at 310.011 kb on + strand, within GFF2624 at 310.011 kb on + strand, within GFF2624 at 310.011 kb on + strand, within GFF2624 at 310.011 kb on + strand, within GFF2624 at 310.012 kb on - strand, within GFF2624 at 310.058 kb on + strand at 310.109 kb on - strand at 310.111 kb on - strand at 310.112 kb on + strand at 310.113 kb on - strand at 310.166 kb on + strand at 310.166 kb on + strand at 310.167 kb on - strand at 310.167 kb on - strand at 310.167 kb on - strand at 310.208 kb on + strand at 310.209 kb on - strand at 310.209 kb on - strand at 310.209 kb on - strand at 310.222 kb on - strand at 310.230 kb on - strand at 310.351 kb on + strand at 310.351 kb on + strand at 310.352 kb on - strand at 310.369 kb on - strand at 310.429 kb on - strand at 310.429 kb on - strand at 310.487 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 307,796 + GFF2622 0.44 -1.2 307,797 - GFF2622 0.44 -0.1 307,886 + GFF2622 0.49 +0.7 307,886 + GFF2622 0.49 +1.2 307,899 + GFF2622 0.50 +0.6 307,899 + GFF2622 0.50 -1.7 307,899 + GFF2622 0.50 +0.9 307,900 - GFF2622 0.50 -0.7 307,900 - GFF2622 0.50 +0.1 307,900 - GFF2622 0.50 -0.4 307,939 - GFF2622 0.53 +0.5 307,948 + GFF2622 0.54 +0.2 307,949 - GFF2622 0.54 -0.4 307,949 - GFF2622 0.54 +0.7 308,065 + GFF2622 0.61 +1.1 308,065 + GFF2622 0.61 -0.2 308,066 - GFF2622 0.61 -0.2 308,066 - GFF2622 0.61 -0.3 308,066 - GFF2622 0.61 -0.5 308,120 + GFF2622 0.65 +0.3 308,295 + GFF2622 0.76 +0.5 308,340 + GFF2622 0.79 -0.4 308,341 - GFF2622 0.79 +0.3 308,341 - GFF2622 0.79 +1.3 308,413 + GFF2622 0.84 +0.4 308,413 + GFF2622 0.84 -0.6 308,413 + GFF2622 0.84 -0.6 308,413 + GFF2622 0.84 +0.6 308,414 - GFF2622 0.84 -0.5 308,461 + GFF2622 0.87 -1.7 308,471 - GFF2622 0.88 -0.0 308,471 - GFF2622 0.88 +1.0 308,471 - GFF2622 0.88 +1.6 308,556 + -0.5 308,556 + +0.4 308,557 - -1.8 308,653 - +0.7 308,773 + -1.0 308,773 + -1.4 308,773 + -0.1 308,773 + -1.1 308,773 + -0.1 308,774 - -0.4 308,774 - -0.4 308,774 - -0.4 308,774 - +1.0 308,774 - -0.4 308,774 - +0.3 308,839 + +0.7 308,839 + -0.1 308,840 - +0.6 308,935 + GFF2623 0.21 +0.8 308,935 + GFF2623 0.21 -0.2 308,935 + GFF2623 0.21 -0.9 308,935 + GFF2623 0.21 +0.5 308,935 + GFF2623 0.21 +0.2 308,935 + GFF2623 0.21 -0.0 308,936 - GFF2623 0.21 +0.1 308,936 - GFF2623 0.21 -0.7 308,936 - GFF2623 0.21 -0.7 308,936 - GFF2623 0.21 -0.7 308,992 + GFF2623 0.28 -0.5 308,993 - GFF2623 0.28 -0.1 309,058 - GFF2623 0.36 +0.1 309,120 + GFF2623 0.44 +0.0 309,120 + GFF2623 0.44 -0.5 309,120 + GFF2623 0.44 +0.3 309,120 + GFF2623 0.44 -1.5 309,121 - GFF2623 0.44 +0.2 309,121 - GFF2623 0.44 -0.0 309,198 + GFF2623 0.54 +0.3 309,316 + GFF2623 0.69 -0.5 309,316 + GFF2623 0.69 +0.6 309,316 + GFF2623 0.69 -0.4 309,316 + GFF2623 0.69 -0.2 309,317 - GFF2623 0.69 +0.8 309,499 + +0.2 309,499 + -0.2 309,499 + -0.7 309,499 + +0.1 309,499 + -0.4 309,500 - -0.1 309,500 - -0.1 309,500 - +0.4 309,500 - +1.2 309,530 + -0.4 309,530 + +0.9 309,531 - +0.0 309,531 - -0.2 309,531 - -0.7 309,533 + +0.6 309,533 + -0.2 309,534 - +0.8 309,534 - -0.4 309,570 + -0.5 309,570 + +0.8 309,570 + +0.0 309,571 - -1.5 309,571 - +0.3 309,571 - +0.5 309,571 - +0.5 309,571 - +0.9 309,571 - +0.7 309,571 - -0.0 309,571 - +0.6 309,694 + +0.8 309,694 + +0.8 309,694 + -0.4 309,694 + -0.2 309,694 + -0.3 309,694 + +0.1 309,695 - +0.6 309,769 + -0.1 309,770 - +0.2 309,770 - +0.1 309,789 + -1.4 309,816 + +0.2 309,816 + +0.2 309,817 - +0.9 309,817 - +0.0 309,881 + -0.2 309,881 + -0.4 309,882 - -0.3 309,882 - -0.5 309,882 - -0.1 309,882 - +0.2 309,970 + GFF2624 0.35 +0.2 309,970 + GFF2624 0.35 +0.9 309,970 + GFF2624 0.35 +0.2 309,970 + GFF2624 0.35 +0.0 309,970 + GFF2624 0.35 -0.1 309,970 + GFF2624 0.35 -1.2 309,971 - GFF2624 0.36 -0.2 309,971 - GFF2624 0.36 -0.4 309,971 - GFF2624 0.36 +0.6 309,992 + GFF2624 0.51 -0.2 309,993 - GFF2624 0.52 +0.2 310,011 + GFF2624 0.65 +0.7 310,011 + GFF2624 0.65 -0.1 310,011 + GFF2624 0.65 -0.3 310,011 + GFF2624 0.65 -0.3 310,011 + GFF2624 0.65 +0.7 310,011 + GFF2624 0.65 +0.4 310,012 - GFF2624 0.65 +0.0 310,058 + -0.1 310,109 - -0.6 310,111 - +0.3 310,112 + +1.0 310,113 - -0.7 310,166 + -0.1 310,166 + +0.3 310,167 - +0.1 310,167 - -0.5 310,167 - +0.2 310,208 + +0.2 310,209 - -0.2 310,209 - -0.6 310,209 - +0.2 310,222 - +0.6 310,230 - -1.1 310,351 + +0.4 310,351 + +1.1 310,352 - -0.3 310,369 - -0.3 310,429 - +0.3 310,429 - -0.2 310,487 + +0.1
Or see this region's nucleotide sequence