Strain Fitness in Xanthobacter sp. DMC5 around GFF2596

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2595 and GFF2596 overlap by 4 nucleotidesGFF2596 and GFF2597 overlap by 1 nucleotides GFF2595 - hypothetical protein, at 277,952 to 279,124 GFF2595 GFF2596 - hypothetical protein, at 279,121 to 279,609 GFF2596 GFF2597 - hypothetical protein, at 279,609 to 281,576 GFF2597 Position (kb) 279 280Strain fitness (log2 ratio) -2 -1 0 1 2at 278.181 kb on + strand, within GFF2595at 278.181 kb on + strand, within GFF2595at 278.181 kb on + strand, within GFF2595at 278.181 kb on + strand, within GFF2595at 278.181 kb on + strand, within GFF2595at 278.182 kb on - strand, within GFF2595at 278.182 kb on - strand, within GFF2595at 278.182 kb on - strand, within GFF2595at 278.182 kb on - strand, within GFF2595at 278.577 kb on - strand, within GFF2595at 278.675 kb on + strand, within GFF2595at 278.675 kb on + strand, within GFF2595at 278.675 kb on + strand, within GFF2595at 278.675 kb on + strand, within GFF2595at 278.676 kb on - strand, within GFF2595at 278.676 kb on - strand, within GFF2595at 278.679 kb on + strand, within GFF2595at 278.679 kb on + strand, within GFF2595at 278.679 kb on + strand, within GFF2595at 278.679 kb on + strand, within GFF2595at 278.679 kb on + strand, within GFF2595at 278.679 kb on + strand, within GFF2595at 278.680 kb on - strand, within GFF2595at 278.680 kb on - strand, within GFF2595at 278.680 kb on - strand, within GFF2595at 278.680 kb on - strand, within GFF2595at 278.680 kb on - strand, within GFF2595at 278.680 kb on - strand, within GFF2595at 278.704 kb on + strand, within GFF2595at 278.800 kb on - strand, within GFF2595at 278.800 kb on - strand, within GFF2595at 278.853 kb on + strand, within GFF2595at 278.853 kb on + strand, within GFF2595at 278.853 kb on + strand, within GFF2595at 278.975 kb on + strand, within GFF2595at 278.976 kb on - strand, within GFF2595at 279.075 kb on + strandat 279.075 kb on + strandat 279.076 kb on - strandat 279.076 kb on - strandat 279.076 kb on - strandat 279.076 kb on - strandat 279.092 kb on + strandat 279.092 kb on + strandat 279.092 kb on + strandat 279.092 kb on + strandat 279.092 kb on + strandat 279.092 kb on + strandat 279.092 kb on + strandat 279.093 kb on - strandat 279.093 kb on - strandat 279.093 kb on - strandat 279.093 kb on - strandat 279.093 kb on - strandat 279.093 kb on - strandat 279.093 kb on - strandat 279.093 kb on - strandat 279.093 kb on - strandat 279.093 kb on - strandat 279.093 kb on - strandat 279.093 kb on - strandat 279.093 kb on - strandat 279.205 kb on + strand, within GFF2596at 279.205 kb on + strand, within GFF2596at 279.205 kb on + strand, within GFF2596at 279.205 kb on + strand, within GFF2596at 279.205 kb on + strand, within GFF2596at 279.205 kb on + strand, within GFF2596at 279.206 kb on - strand, within GFF2596at 279.206 kb on - strand, within GFF2596at 279.206 kb on - strand, within GFF2596at 279.206 kb on - strand, within GFF2596at 279.230 kb on + strand, within GFF2596at 279.230 kb on + strand, within GFF2596at 279.230 kb on + strand, within GFF2596at 279.237 kb on + strand, within GFF2596at 279.237 kb on + strand, within GFF2596at 279.238 kb on - strand, within GFF2596at 279.238 kb on - strand, within GFF2596at 279.238 kb on - strand, within GFF2596at 279.282 kb on + strand, within GFF2596at 279.282 kb on + strand, within GFF2596at 279.282 kb on + strand, within GFF2596at 279.282 kb on + strand, within GFF2596at 279.282 kb on + strand, within GFF2596at 279.282 kb on + strand, within GFF2596at 279.283 kb on - strand, within GFF2596at 279.283 kb on - strand, within GFF2596at 279.283 kb on - strand, within GFF2596at 279.284 kb on - strand, within GFF2596at 279.324 kb on - strand, within GFF2596at 279.338 kb on + strand, within GFF2596at 279.339 kb on - strand, within GFF2596at 279.361 kb on + strand, within GFF2596at 279.361 kb on + strand, within GFF2596at 279.361 kb on + strand, within GFF2596at 279.361 kb on + strand, within GFF2596at 279.361 kb on + strand, within GFF2596at 279.362 kb on - strand, within GFF2596at 279.362 kb on - strand, within GFF2596at 279.362 kb on - strand, within GFF2596at 279.362 kb on - strand, within GFF2596at 279.362 kb on - strand, within GFF2596at 279.366 kb on - strand, within GFF2596at 279.457 kb on + strand, within GFF2596at 279.457 kb on + strand, within GFF2596at 279.457 kb on + strand, within GFF2596at 279.457 kb on + strand, within GFF2596at 279.457 kb on + strand, within GFF2596at 279.457 kb on + strand, within GFF2596at 279.459 kb on + strand, within GFF2596at 279.459 kb on + strand, within GFF2596at 279.459 kb on + strand, within GFF2596at 279.460 kb on - strand, within GFF2596at 279.460 kb on - strand, within GFF2596at 279.460 kb on - strand, within GFF2596at 279.460 kb on - strand, within GFF2596at 279.520 kb on + strand, within GFF2596at 279.520 kb on + strand, within GFF2596at 279.521 kb on - strand, within GFF2596at 279.521 kb on - strand, within GFF2596at 279.638 kb on - strandat 279.750 kb on + strandat 279.751 kb on - strandat 279.854 kb on - strand, within GFF2597at 279.904 kb on + strand, within GFF2597at 279.904 kb on + strand, within GFF2597at 279.904 kb on + strand, within GFF2597at 279.904 kb on + strand, within GFF2597at 279.904 kb on + strand, within GFF2597at 279.904 kb on + strand, within GFF2597at 279.950 kb on + strand, within GFF2597at 279.951 kb on - strand, within GFF2597at 279.951 kb on - strand, within GFF2597at 280.081 kb on - strand, within GFF2597at 280.081 kb on - strand, within GFF2597at 280.081 kb on - strand, within GFF2597at 280.107 kb on + strand, within GFF2597at 280.108 kb on - strand, within GFF2597at 280.108 kb on - strand, within GFF2597at 280.108 kb on - strand, within GFF2597at 280.161 kb on + strand, within GFF2597at 280.161 kb on + strand, within GFF2597at 280.161 kb on + strand, within GFF2597at 280.161 kb on + strand, within GFF2597at 280.213 kb on - strand, within GFF2597at 280.217 kb on + strand, within GFF2597at 280.218 kb on - strand, within GFF2597at 280.218 kb on - strand, within GFF2597at 280.218 kb on - strand, within GFF2597at 280.218 kb on - strand, within GFF2597at 280.238 kb on + strand, within GFF2597at 280.323 kb on + strand, within GFF2597at 280.323 kb on + strand, within GFF2597at 280.324 kb on - strand, within GFF2597at 280.425 kb on - strand, within GFF2597at 280.425 kb on - strand, within GFF2597at 280.425 kb on - strand, within GFF2597at 280.523 kb on - strand, within GFF2597at 280.523 kb on - strand, within GFF2597at 280.560 kb on + strand, within GFF2597at 280.560 kb on + strand, within GFF2597at 280.560 kb on + strand, within GFF2597at 280.560 kb on + strand, within GFF2597at 280.560 kb on + strand, within GFF2597at 280.560 kb on + strand, within GFF2597at 280.560 kb on + strand, within GFF2597at 280.561 kb on - strand, within GFF2597

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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278,181 + GFF2595 0.20 -1.5
278,181 + GFF2595 0.20 -0.5
278,181 + GFF2595 0.20 -1.0
278,181 + GFF2595 0.20 -0.0
278,181 + GFF2595 0.20 -1.3
278,182 - GFF2595 0.20 -0.5
278,182 - GFF2595 0.20 +0.1
278,182 - GFF2595 0.20 -0.4
278,182 - GFF2595 0.20 +0.6
278,577 - GFF2595 0.53 +0.4
278,675 + GFF2595 0.62 +0.3
278,675 + GFF2595 0.62 -1.1
278,675 + GFF2595 0.62 +1.3
278,675 + GFF2595 0.62 +0.8
278,676 - GFF2595 0.62 +0.2
278,676 - GFF2595 0.62 +0.0
278,679 + GFF2595 0.62 +1.9
278,679 + GFF2595 0.62 -1.0
278,679 + GFF2595 0.62 -0.8
278,679 + GFF2595 0.62 -1.5
278,679 + GFF2595 0.62 +1.5
278,679 + GFF2595 0.62 +0.0
278,680 - GFF2595 0.62 -1.8
278,680 - GFF2595 0.62 -0.2
278,680 - GFF2595 0.62 +1.1
278,680 - GFF2595 0.62 +0.9
278,680 - GFF2595 0.62 -0.7
278,680 - GFF2595 0.62 -0.0
278,704 + GFF2595 0.64 +0.2
278,800 - GFF2595 0.72 +0.1
278,800 - GFF2595 0.72 -0.2
278,853 + GFF2595 0.77 -0.6
278,853 + GFF2595 0.77 -1.0
278,853 + GFF2595 0.77 -0.1
278,975 + GFF2595 0.87 -0.6
278,976 - GFF2595 0.87 -0.6
279,075 + -0.2
279,075 + -0.7
279,076 - -1.0
279,076 - -0.8
279,076 - +1.1
279,076 - +0.0
279,092 + -0.7
279,092 + -1.2
279,092 + -0.9
279,092 + -0.6
279,092 + +0.6
279,092 + -1.5
279,092 + -0.9
279,093 - -0.0
279,093 - -1.1
279,093 - -0.8
279,093 - -0.9
279,093 - -0.8
279,093 - -0.5
279,093 - +0.1
279,093 - -0.3
279,093 - -1.0
279,093 - -1.5
279,093 - -0.2
279,093 - +0.8
279,093 - +0.9
279,205 + GFF2596 0.17 +0.0
279,205 + GFF2596 0.17 -0.4
279,205 + GFF2596 0.17 +0.8
279,205 + GFF2596 0.17 -0.8
279,205 + GFF2596 0.17 -2.5
279,205 + GFF2596 0.17 +0.0
279,206 - GFF2596 0.17 -0.0
279,206 - GFF2596 0.17 -1.1
279,206 - GFF2596 0.17 -0.5
279,206 - GFF2596 0.17 +0.0
279,230 + GFF2596 0.22 -0.1
279,230 + GFF2596 0.22 -1.1
279,230 + GFF2596 0.22 -0.7
279,237 + GFF2596 0.24 +0.9
279,237 + GFF2596 0.24 +0.0
279,238 - GFF2596 0.24 -0.4
279,238 - GFF2596 0.24 -0.7
279,238 - GFF2596 0.24 +0.3
279,282 + GFF2596 0.33 -0.6
279,282 + GFF2596 0.33 -0.2
279,282 + GFF2596 0.33 -0.6
279,282 + GFF2596 0.33 -0.6
279,282 + GFF2596 0.33 -0.5
279,282 + GFF2596 0.33 -0.2
279,283 - GFF2596 0.33 -0.5
279,283 - GFF2596 0.33 -0.1
279,283 - GFF2596 0.33 -0.3
279,284 - GFF2596 0.33 -0.1
279,324 - GFF2596 0.42 -1.3
279,338 + GFF2596 0.44 +0.3
279,339 - GFF2596 0.45 +0.8
279,361 + GFF2596 0.49 -1.3
279,361 + GFF2596 0.49 -0.1
279,361 + GFF2596 0.49 -0.4
279,361 + GFF2596 0.49 -0.2
279,361 + GFF2596 0.49 +0.1
279,362 - GFF2596 0.49 +0.1
279,362 - GFF2596 0.49 -1.1
279,362 - GFF2596 0.49 -0.2
279,362 - GFF2596 0.49 -0.9
279,362 - GFF2596 0.49 -0.9
279,366 - GFF2596 0.50 -0.8
279,457 + GFF2596 0.69 +0.4
279,457 + GFF2596 0.69 +0.5
279,457 + GFF2596 0.69 -0.1
279,457 + GFF2596 0.69 +0.8
279,457 + GFF2596 0.69 -1.4
279,457 + GFF2596 0.69 -0.7
279,459 + GFF2596 0.69 +0.8
279,459 + GFF2596 0.69 -0.1
279,459 + GFF2596 0.69 -0.1
279,460 - GFF2596 0.69 -2.4
279,460 - GFF2596 0.69 -0.1
279,460 - GFF2596 0.69 -0.2
279,460 - GFF2596 0.69 -1.0
279,520 + GFF2596 0.82 +0.3
279,520 + GFF2596 0.82 +0.5
279,521 - GFF2596 0.82 +0.6
279,521 - GFF2596 0.82 +0.3
279,638 - -1.3
279,750 + -1.6
279,751 - -1.4
279,854 - GFF2597 0.12 -0.0
279,904 + GFF2597 0.15 -0.3
279,904 + GFF2597 0.15 +0.0
279,904 + GFF2597 0.15 -1.4
279,904 + GFF2597 0.15 -0.8
279,904 + GFF2597 0.15 +0.5
279,904 + GFF2597 0.15 -0.7
279,950 + GFF2597 0.17 -0.2
279,951 - GFF2597 0.17 -0.5
279,951 - GFF2597 0.17 -0.3
280,081 - GFF2597 0.24 +1.3
280,081 - GFF2597 0.24 -1.2
280,081 - GFF2597 0.24 -0.3
280,107 + GFF2597 0.25 +0.8
280,108 - GFF2597 0.25 -0.2
280,108 - GFF2597 0.25 -2.6
280,108 - GFF2597 0.25 -1.0
280,161 + GFF2597 0.28 -1.5
280,161 + GFF2597 0.28 +0.2
280,161 + GFF2597 0.28 -0.7
280,161 + GFF2597 0.28 -0.7
280,213 - GFF2597 0.31 -1.8
280,217 + GFF2597 0.31 +1.0
280,218 - GFF2597 0.31 -0.5
280,218 - GFF2597 0.31 -1.1
280,218 - GFF2597 0.31 +0.2
280,218 - GFF2597 0.31 -0.1
280,238 + GFF2597 0.32 -1.5
280,323 + GFF2597 0.36 -0.3
280,323 + GFF2597 0.36 +0.1
280,324 - GFF2597 0.36 -2.4
280,425 - GFF2597 0.41 -0.7
280,425 - GFF2597 0.41 -1.3
280,425 - GFF2597 0.41 -0.8
280,523 - GFF2597 0.46 +0.3
280,523 - GFF2597 0.46 -0.7
280,560 + GFF2597 0.48 -1.3
280,560 + GFF2597 0.48 -0.2
280,560 + GFF2597 0.48 -1.2
280,560 + GFF2597 0.48 -0.8
280,560 + GFF2597 0.48 -0.8
280,560 + GFF2597 0.48 -0.3
280,560 + GFF2597 0.48 -0.1
280,561 - GFF2597 0.48 -0.5

Or see this region's nucleotide sequence