Strain Fitness in Xanthobacter sp. DMC5 around GFF2579

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2578 and GFF2579 are separated by 178 nucleotidesGFF2579 and GFF2580 are separated by 60 nucleotides GFF2578 - Solute-binding protein, at 257,877 to 258,926 GFF2578 GFF2579 - Long-chain-fatty-acid--CoA ligase, at 259,105 to 260,634 GFF2579 GFF2580 - hypothetical protein, at 260,695 to 262,065 GFF2580 Position (kb) 259 260 261Strain fitness (log2 ratio) -3 -2 -1 0 1at 258.181 kb on + strand, within GFF2578at 258.181 kb on + strand, within GFF2578at 258.181 kb on + strand, within GFF2578at 258.182 kb on - strand, within GFF2578at 258.182 kb on - strand, within GFF2578at 258.182 kb on - strand, within GFF2578at 258.182 kb on - strand, within GFF2578at 258.182 kb on - strand, within GFF2578at 258.295 kb on + strand, within GFF2578at 258.295 kb on + strand, within GFF2578at 258.295 kb on + strand, within GFF2578at 258.295 kb on + strand, within GFF2578at 258.295 kb on + strand, within GFF2578at 258.296 kb on - strand, within GFF2578at 258.296 kb on - strand, within GFF2578at 258.296 kb on - strand, within GFF2578at 258.296 kb on - strand, within GFF2578at 258.484 kb on + strand, within GFF2578at 258.485 kb on - strand, within GFF2578at 258.485 kb on - strand, within GFF2578at 258.538 kb on + strand, within GFF2578at 258.538 kb on + strand, within GFF2578at 258.538 kb on + strand, within GFF2578at 258.539 kb on - strand, within GFF2578at 258.539 kb on - strand, within GFF2578at 258.539 kb on - strand, within GFF2578at 258.569 kb on + strand, within GFF2578at 258.569 kb on + strand, within GFF2578at 258.569 kb on + strand, within GFF2578at 258.569 kb on + strand, within GFF2578at 258.569 kb on + strand, within GFF2578at 258.569 kb on + strand, within GFF2578at 258.570 kb on - strand, within GFF2578at 258.570 kb on - strand, within GFF2578at 258.570 kb on - strand, within GFF2578at 258.570 kb on - strand, within GFF2578at 258.598 kb on + strand, within GFF2578at 258.598 kb on + strand, within GFF2578at 258.599 kb on - strand, within GFF2578at 258.610 kb on + strand, within GFF2578at 258.611 kb on - strand, within GFF2578at 258.685 kb on + strand, within GFF2578at 258.685 kb on + strand, within GFF2578at 258.685 kb on + strand, within GFF2578at 258.686 kb on - strand, within GFF2578at 258.686 kb on - strand, within GFF2578at 258.686 kb on - strand, within GFF2578at 258.686 kb on - strand, within GFF2578at 259.026 kb on + strandat 259.026 kb on + strandat 259.026 kb on + strandat 259.026 kb on + strandat 259.026 kb on + strandat 259.027 kb on - strandat 259.027 kb on - strandat 259.027 kb on - strandat 259.116 kb on + strandat 259.117 kb on - strandat 259.121 kb on + strandat 259.133 kb on + strandat 259.134 kb on - strandat 259.397 kb on + strand, within GFF2579at 259.398 kb on - strand, within GFF2579at 259.454 kb on + strand, within GFF2579at 259.541 kb on + strand, within GFF2579at 259.541 kb on + strand, within GFF2579at 259.541 kb on + strand, within GFF2579at 259.630 kb on + strand, within GFF2579at 259.630 kb on + strand, within GFF2579at 259.631 kb on - strand, within GFF2579at 259.652 kb on + strand, within GFF2579at 259.653 kb on - strand, within GFF2579at 259.685 kb on + strand, within GFF2579at 259.685 kb on + strand, within GFF2579at 259.702 kb on - strand, within GFF2579at 259.865 kb on + strand, within GFF2579at 259.866 kb on - strand, within GFF2579at 259.937 kb on - strand, within GFF2579at 260.061 kb on - strand, within GFF2579at 260.144 kb on + strand, within GFF2579at 260.144 kb on + strand, within GFF2579at 260.145 kb on - strand, within GFF2579at 260.145 kb on - strand, within GFF2579at 260.145 kb on - strand, within GFF2579at 260.194 kb on - strand, within GFF2579at 260.351 kb on + strand, within GFF2579at 260.351 kb on + strand, within GFF2579at 260.351 kb on + strand, within GFF2579at 260.352 kb on - strand, within GFF2579at 260.352 kb on - strand, within GFF2579at 260.370 kb on + strand, within GFF2579at 260.370 kb on + strand, within GFF2579at 260.370 kb on + strand, within GFF2579at 260.370 kb on + strand, within GFF2579at 260.371 kb on - strand, within GFF2579at 260.371 kb on - strand, within GFF2579at 260.371 kb on - strand, within GFF2579at 260.372 kb on + strand, within GFF2579at 260.372 kb on + strand, within GFF2579at 260.372 kb on + strand, within GFF2579at 260.423 kb on + strand, within GFF2579at 260.423 kb on + strand, within GFF2579at 260.423 kb on + strand, within GFF2579at 260.424 kb on - strand, within GFF2579at 260.540 kb on + strandat 260.540 kb on + strandat 260.540 kb on + strandat 260.541 kb on - strandat 260.541 kb on - strandat 260.541 kb on - strandat 260.822 kb on + strandat 260.822 kb on + strandat 260.823 kb on - strandat 260.828 kb on + strandat 260.828 kb on + strandat 260.828 kb on + strandat 260.828 kb on + strandat 260.828 kb on + strandat 260.828 kb on + strandat 260.829 kb on - strandat 260.829 kb on - strandat 260.978 kb on + strand, within GFF2580at 260.979 kb on - strand, within GFF2580at 260.979 kb on - strand, within GFF2580at 260.979 kb on - strand, within GFF2580at 260.979 kb on - strand, within GFF2580at 260.982 kb on - strand, within GFF2580at 260.982 kb on - strand, within GFF2580at 260.982 kb on - strand, within GFF2580at 260.982 kb on - strand, within GFF2580at 261.272 kb on + strand, within GFF2580at 261.272 kb on + strand, within GFF2580at 261.273 kb on - strand, within GFF2580at 261.273 kb on - strand, within GFF2580at 261.419 kb on + strand, within GFF2580at 261.481 kb on + strand, within GFF2580at 261.481 kb on + strand, within GFF2580at 261.481 kb on + strand, within GFF2580at 261.491 kb on + strand, within GFF2580at 261.491 kb on + strand, within GFF2580

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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258,181 + GFF2578 0.29 +0.9
258,181 + GFF2578 0.29 -0.4
258,181 + GFF2578 0.29 -0.1
258,182 - GFF2578 0.29 -0.5
258,182 - GFF2578 0.29 -0.5
258,182 - GFF2578 0.29 -0.7
258,182 - GFF2578 0.29 +0.1
258,182 - GFF2578 0.29 -1.2
258,295 + GFF2578 0.40 -1.3
258,295 + GFF2578 0.40 -0.9
258,295 + GFF2578 0.40 +0.2
258,295 + GFF2578 0.40 -0.6
258,295 + GFF2578 0.40 +1.3
258,296 - GFF2578 0.40 -0.5
258,296 - GFF2578 0.40 +1.3
258,296 - GFF2578 0.40 -0.9
258,296 - GFF2578 0.40 +0.4
258,484 + GFF2578 0.58 +1.2
258,485 - GFF2578 0.58 +0.1
258,485 - GFF2578 0.58 +0.3
258,538 + GFF2578 0.63 +0.6
258,538 + GFF2578 0.63 -1.2
258,538 + GFF2578 0.63 +0.1
258,539 - GFF2578 0.63 -0.1
258,539 - GFF2578 0.63 +0.3
258,539 - GFF2578 0.63 -1.2
258,569 + GFF2578 0.66 +1.0
258,569 + GFF2578 0.66 +1.0
258,569 + GFF2578 0.66 +0.2
258,569 + GFF2578 0.66 +0.2
258,569 + GFF2578 0.66 +0.6
258,569 + GFF2578 0.66 +0.1
258,570 - GFF2578 0.66 -0.4
258,570 - GFF2578 0.66 +1.0
258,570 - GFF2578 0.66 +1.6
258,570 - GFF2578 0.66 +0.0
258,598 + GFF2578 0.69 -1.1
258,598 + GFF2578 0.69 -0.4
258,599 - GFF2578 0.69 +0.3
258,610 + GFF2578 0.70 -0.2
258,611 - GFF2578 0.70 +0.0
258,685 + GFF2578 0.77 +0.7
258,685 + GFF2578 0.77 -0.3
258,685 + GFF2578 0.77 -0.6
258,686 - GFF2578 0.77 -0.5
258,686 - GFF2578 0.77 -0.9
258,686 - GFF2578 0.77 +0.4
258,686 - GFF2578 0.77 +0.0
259,026 + +0.5
259,026 + +0.6
259,026 + -0.1
259,026 + +0.3
259,026 + +1.5
259,027 - -0.6
259,027 - +0.6
259,027 - +0.5
259,116 + -0.6
259,117 - -0.2
259,121 + -1.2
259,133 + +1.6
259,134 - +0.0
259,397 + GFF2579 0.19 -0.6
259,398 - GFF2579 0.19 -1.0
259,454 + GFF2579 0.23 +0.4
259,541 + GFF2579 0.28 -0.6
259,541 + GFF2579 0.28 -0.3
259,541 + GFF2579 0.28 +0.3
259,630 + GFF2579 0.34 +0.4
259,630 + GFF2579 0.34 -0.8
259,631 - GFF2579 0.34 -3.1
259,652 + GFF2579 0.36 +1.3
259,653 - GFF2579 0.36 -1.4
259,685 + GFF2579 0.38 +1.3
259,685 + GFF2579 0.38 +1.1
259,702 - GFF2579 0.39 +0.0
259,865 + GFF2579 0.50 -0.5
259,866 - GFF2579 0.50 +0.0
259,937 - GFF2579 0.54 +1.0
260,061 - GFF2579 0.62 -0.8
260,144 + GFF2579 0.68 -0.8
260,144 + GFF2579 0.68 +0.7
260,145 - GFF2579 0.68 +0.0
260,145 - GFF2579 0.68 -1.2
260,145 - GFF2579 0.68 -0.7
260,194 - GFF2579 0.71 -0.6
260,351 + GFF2579 0.81 -0.7
260,351 + GFF2579 0.81 +0.6
260,351 + GFF2579 0.81 +0.2
260,352 - GFF2579 0.82 +0.3
260,352 - GFF2579 0.82 -0.8
260,370 + GFF2579 0.83 +0.6
260,370 + GFF2579 0.83 -0.2
260,370 + GFF2579 0.83 +0.1
260,370 + GFF2579 0.83 +0.0
260,371 - GFF2579 0.83 -1.0
260,371 - GFF2579 0.83 -0.5
260,371 - GFF2579 0.83 -0.3
260,372 + GFF2579 0.83 +1.2
260,372 + GFF2579 0.83 +0.2
260,372 + GFF2579 0.83 -2.1
260,423 + GFF2579 0.86 -0.3
260,423 + GFF2579 0.86 +0.1
260,423 + GFF2579 0.86 +0.2
260,424 - GFF2579 0.86 +0.3
260,540 + -0.3
260,540 + -0.9
260,540 + -0.6
260,541 - +0.2
260,541 - -1.8
260,541 - +0.5
260,822 + +0.4
260,822 + +0.3
260,823 - +1.2
260,828 + -0.2
260,828 + +0.1
260,828 + -0.2
260,828 + +0.2
260,828 + -0.8
260,828 + -0.1
260,829 - +0.2
260,829 - +0.5
260,978 + GFF2580 0.21 +1.6
260,979 - GFF2580 0.21 -1.0
260,979 - GFF2580 0.21 -0.6
260,979 - GFF2580 0.21 -0.5
260,979 - GFF2580 0.21 -1.0
260,982 - GFF2580 0.21 +0.3
260,982 - GFF2580 0.21 +0.3
260,982 - GFF2580 0.21 +0.5
260,982 - GFF2580 0.21 +0.8
261,272 + GFF2580 0.42 +0.9
261,272 + GFF2580 0.42 +0.2
261,273 - GFF2580 0.42 +0.3
261,273 - GFF2580 0.42 -0.4
261,419 + GFF2580 0.53 -0.5
261,481 + GFF2580 0.57 +0.1
261,481 + GFF2580 0.57 +1.4
261,481 + GFF2580 0.57 -0.3
261,491 + GFF2580 0.58 -0.6
261,491 + GFF2580 0.58 +0.8

Or see this region's nucleotide sequence