Strain Fitness in Xanthobacter sp. DMC5 around GFF2571

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2570 and GFF2571 are separated by 385 nucleotidesGFF2571 and GFF2572 are separated by 27 nucleotides GFF2570 - Protein translocase subunit SecA, at 240,946 to 243,726 GFF2570 GFF2571 - Efflux pump periplasmic linker BepF, at 244,112 to 245,428 GFF2571 GFF2572 - Efflux pump membrane transporter BepE, at 245,456 to 248,665 GFF2572 Position (kb) 244 245 246Strain fitness (log2 ratio) -2 -1 0 1at 243.737 kb on - strandat 243.921 kb on - strandat 243.921 kb on - strandat 244.077 kb on + strandat 244.077 kb on + strandat 244.077 kb on + strandat 244.077 kb on + strandat 244.078 kb on - strandat 244.078 kb on - strandat 244.078 kb on - strandat 244.112 kb on - strandat 244.208 kb on + strandat 244.208 kb on + strandat 244.209 kb on - strandat 244.209 kb on - strandat 244.209 kb on - strandat 244.212 kb on + strandat 244.342 kb on + strand, within GFF2571at 244.342 kb on + strand, within GFF2571at 244.355 kb on + strand, within GFF2571at 244.356 kb on - strand, within GFF2571at 244.415 kb on + strand, within GFF2571at 244.415 kb on + strand, within GFF2571at 244.415 kb on + strand, within GFF2571at 244.416 kb on - strand, within GFF2571at 244.416 kb on - strand, within GFF2571at 244.416 kb on - strand, within GFF2571at 244.633 kb on + strand, within GFF2571at 244.634 kb on - strand, within GFF2571at 244.634 kb on - strand, within GFF2571at 244.705 kb on + strand, within GFF2571at 244.706 kb on - strand, within GFF2571at 244.913 kb on + strand, within GFF2571at 244.913 kb on + strand, within GFF2571at 244.913 kb on + strand, within GFF2571at 244.913 kb on + strand, within GFF2571at 244.913 kb on + strand, within GFF2571at 244.914 kb on - strand, within GFF2571at 244.914 kb on - strand, within GFF2571at 244.914 kb on - strand, within GFF2571at 245.072 kb on + strand, within GFF2571at 245.072 kb on + strand, within GFF2571at 245.072 kb on + strand, within GFF2571at 245.073 kb on - strand, within GFF2571at 245.090 kb on + strand, within GFF2571at 245.091 kb on - strand, within GFF2571at 245.091 kb on - strand, within GFF2571at 245.091 kb on - strand, within GFF2571at 245.514 kb on + strandat 245.687 kb on + strandat 245.687 kb on + strandat 245.688 kb on - strandat 245.688 kb on - strandat 245.688 kb on - strandat 245.688 kb on - strandat 245.720 kb on + strandat 245.720 kb on + strandat 245.720 kb on + strandat 245.720 kb on + strandat 245.721 kb on - strandat 245.721 kb on - strandat 245.721 kb on - strandat 245.721 kb on - strandat 245.721 kb on - strandat 245.903 kb on + strand, within GFF2572at 245.903 kb on + strand, within GFF2572at 245.927 kb on + strand, within GFF2572at 245.927 kb on + strand, within GFF2572at 245.927 kb on + strand, within GFF2572at 245.928 kb on - strand, within GFF2572at 245.928 kb on - strand, within GFF2572at 245.928 kb on - strand, within GFF2572at 245.928 kb on - strand, within GFF2572at 245.928 kb on - strand, within GFF2572at 245.938 kb on - strand, within GFF2572at 246.005 kb on + strand, within GFF2572at 246.005 kb on + strand, within GFF2572at 246.005 kb on + strand, within GFF2572at 246.005 kb on + strand, within GFF2572at 246.005 kb on + strand, within GFF2572at 246.005 kb on + strand, within GFF2572at 246.006 kb on - strand, within GFF2572at 246.006 kb on - strand, within GFF2572at 246.006 kb on - strand, within GFF2572at 246.006 kb on - strand, within GFF2572at 246.198 kb on - strand, within GFF2572at 246.290 kb on + strand, within GFF2572at 246.290 kb on + strand, within GFF2572at 246.290 kb on + strand, within GFF2572at 246.290 kb on + strand, within GFF2572at 246.291 kb on - strand, within GFF2572at 246.291 kb on - strand, within GFF2572at 246.291 kb on - strand, within GFF2572at 246.291 kb on - strand, within GFF2572at 246.291 kb on - strand, within GFF2572at 246.410 kb on + strand, within GFF2572

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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243,737 - +0.2
243,921 - -0.3
243,921 - +0.1
244,077 + +0.2
244,077 + -0.0
244,077 + -0.2
244,077 + -0.3
244,078 - -0.0
244,078 - +1.3
244,078 - -1.1
244,112 - -1.4
244,208 + +0.0
244,208 + +0.1
244,209 - -1.2
244,209 - -0.2
244,209 - -0.4
244,212 + -0.3
244,342 + GFF2571 0.17 -0.3
244,342 + GFF2571 0.17 -0.1
244,355 + GFF2571 0.18 -0.1
244,356 - GFF2571 0.19 -1.0
244,415 + GFF2571 0.23 -1.1
244,415 + GFF2571 0.23 +0.1
244,415 + GFF2571 0.23 -0.1
244,416 - GFF2571 0.23 -1.1
244,416 - GFF2571 0.23 +0.7
244,416 - GFF2571 0.23 -0.4
244,633 + GFF2571 0.40 +0.1
244,634 - GFF2571 0.40 +0.6
244,634 - GFF2571 0.40 +0.4
244,705 + GFF2571 0.45 +1.4
244,706 - GFF2571 0.45 +0.4
244,913 + GFF2571 0.61 +0.6
244,913 + GFF2571 0.61 -0.3
244,913 + GFF2571 0.61 -0.5
244,913 + GFF2571 0.61 +0.1
244,913 + GFF2571 0.61 +0.7
244,914 - GFF2571 0.61 -0.7
244,914 - GFF2571 0.61 -0.6
244,914 - GFF2571 0.61 +1.0
245,072 + GFF2571 0.73 +0.8
245,072 + GFF2571 0.73 -0.9
245,072 + GFF2571 0.73 +1.4
245,073 - GFF2571 0.73 -0.5
245,090 + GFF2571 0.74 -0.2
245,091 - GFF2571 0.74 -2.3
245,091 - GFF2571 0.74 +0.6
245,091 - GFF2571 0.74 -1.5
245,514 + -0.8
245,687 + +0.1
245,687 + +0.3
245,688 - +0.9
245,688 - -1.4
245,688 - +0.5
245,688 - -0.7
245,720 + +0.3
245,720 + -1.1
245,720 + +0.0
245,720 + -0.4
245,721 - -0.1
245,721 - -0.7
245,721 - -1.1
245,721 - -0.3
245,721 - +0.5
245,903 + GFF2572 0.14 +0.1
245,903 + GFF2572 0.14 +0.2
245,927 + GFF2572 0.15 +0.2
245,927 + GFF2572 0.15 -0.8
245,927 + GFF2572 0.15 +1.0
245,928 - GFF2572 0.15 +0.2
245,928 - GFF2572 0.15 +0.5
245,928 - GFF2572 0.15 +0.8
245,928 - GFF2572 0.15 -1.1
245,928 - GFF2572 0.15 -0.5
245,938 - GFF2572 0.15 +0.9
246,005 + GFF2572 0.17 -0.5
246,005 + GFF2572 0.17 +0.8
246,005 + GFF2572 0.17 -0.3
246,005 + GFF2572 0.17 -0.2
246,005 + GFF2572 0.17 -0.4
246,005 + GFF2572 0.17 -0.2
246,006 - GFF2572 0.17 +0.2
246,006 - GFF2572 0.17 -0.6
246,006 - GFF2572 0.17 +1.1
246,006 - GFF2572 0.17 -0.9
246,198 - GFF2572 0.23 +0.5
246,290 + GFF2572 0.26 +0.1
246,290 + GFF2572 0.26 -0.4
246,290 + GFF2572 0.26 -0.7
246,290 + GFF2572 0.26 -0.3
246,291 - GFF2572 0.26 +1.5
246,291 - GFF2572 0.26 +1.3
246,291 - GFF2572 0.26 +1.1
246,291 - GFF2572 0.26 -0.8
246,291 - GFF2572 0.26 -1.3
246,410 + GFF2572 0.30 +0.1

Or see this region's nucleotide sequence