Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2535 and GFF2536 are separated by 84 nucleotides GFF2536 and GFF2537 are separated by 130 nucleotides GFF2537 and GFF2538 are separated by 469 nucleotides
GFF2535 - Formyl-CoA:oxalate CoA-transferase, at 204,963 to 206,240
GFF2535
GFF2536 - Sensor protein FixL, at 206,325 to 206,768
GFF2536
GFF2537 - Formyl-CoA:oxalate CoA-transferase, at 206,899 to 208,152
GFF2537
GFF2538 - Succinate--CoA ligase [ADP-forming] subunit beta, at 208,622 to 209,824
GFF2538
Position (kb) 206
207
208
209 Strain fitness (log2 ratio) -2
-1
0
1 at 205.935 kb on + strand, within GFF2535 at 205.950 kb on + strand, within GFF2535 at 205.950 kb on + strand, within GFF2535 at 205.951 kb on - strand, within GFF2535 at 205.951 kb on - strand, within GFF2535 at 205.951 kb on - strand, within GFF2535 at 206.010 kb on + strand, within GFF2535 at 206.010 kb on + strand, within GFF2535 at 206.011 kb on - strand, within GFF2535 at 206.011 kb on - strand, within GFF2535 at 206.058 kb on + strand, within GFF2535 at 206.058 kb on + strand, within GFF2535 at 206.058 kb on + strand, within GFF2535 at 206.058 kb on + strand, within GFF2535 at 206.058 kb on + strand, within GFF2535 at 206.059 kb on - strand, within GFF2535 at 206.238 kb on + strand at 206.238 kb on + strand at 206.330 kb on + strand at 206.331 kb on - strand at 206.380 kb on - strand, within GFF2536 at 206.521 kb on - strand, within GFF2536 at 206.611 kb on + strand, within GFF2536 at 206.767 kb on - strand at 206.767 kb on - strand at 206.767 kb on - strand at 206.767 kb on - strand at 207.076 kb on + strand, within GFF2537 at 207.076 kb on + strand, within GFF2537 at 207.298 kb on + strand, within GFF2537 at 207.299 kb on - strand, within GFF2537 at 207.311 kb on - strand, within GFF2537 at 207.316 kb on + strand, within GFF2537 at 207.316 kb on + strand, within GFF2537 at 207.316 kb on + strand, within GFF2537 at 207.316 kb on + strand, within GFF2537 at 207.317 kb on - strand, within GFF2537 at 207.317 kb on - strand, within GFF2537 at 207.568 kb on + strand, within GFF2537 at 207.568 kb on + strand, within GFF2537 at 207.580 kb on + strand, within GFF2537 at 207.580 kb on + strand, within GFF2537 at 207.581 kb on - strand, within GFF2537 at 207.589 kb on + strand, within GFF2537 at 207.590 kb on - strand, within GFF2537 at 207.701 kb on - strand, within GFF2537 at 207.701 kb on - strand, within GFF2537 at 207.701 kb on - strand, within GFF2537 at 207.701 kb on - strand, within GFF2537 at 207.701 kb on - strand, within GFF2537 at 207.701 kb on - strand, within GFF2537 at 207.701 kb on - strand, within GFF2537 at 207.701 kb on - strand, within GFF2537 at 207.701 kb on - strand, within GFF2537 at 207.706 kb on + strand, within GFF2537 at 207.707 kb on - strand, within GFF2537 at 207.707 kb on - strand, within GFF2537 at 207.707 kb on - strand, within GFF2537 at 207.784 kb on + strand, within GFF2537 at 207.785 kb on - strand, within GFF2537 at 208.001 kb on - strand, within GFF2537 at 208.105 kb on + strand at 208.106 kb on - strand at 208.420 kb on + strand at 208.421 kb on - strand at 208.421 kb on - strand at 208.637 kb on + strand at 208.637 kb on + strand at 208.638 kb on - strand at 208.840 kb on + strand, within GFF2538 at 208.840 kb on + strand, within GFF2538 at 208.841 kb on - strand, within GFF2538 at 208.940 kb on + strand, within GFF2538 at 208.940 kb on + strand, within GFF2538 at 208.941 kb on - strand, within GFF2538
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 205,935 + GFF2535 0.76 -0.0 205,950 + GFF2535 0.77 +0.8 205,950 + GFF2535 0.77 +0.4 205,951 - GFF2535 0.77 +0.3 205,951 - GFF2535 0.77 -0.0 205,951 - GFF2535 0.77 +0.1 206,010 + GFF2535 0.82 -0.4 206,010 + GFF2535 0.82 +0.5 206,011 - GFF2535 0.82 -1.1 206,011 - GFF2535 0.82 +0.4 206,058 + GFF2535 0.86 -0.4 206,058 + GFF2535 0.86 +0.0 206,058 + GFF2535 0.86 -1.5 206,058 + GFF2535 0.86 +1.3 206,058 + GFF2535 0.86 +0.1 206,059 - GFF2535 0.86 -0.5 206,238 + +0.4 206,238 + +0.5 206,330 + -0.6 206,331 - -0.2 206,380 - GFF2536 0.12 +0.6 206,521 - GFF2536 0.44 +0.3 206,611 + GFF2536 0.64 -1.6 206,767 - -0.7 206,767 - +0.3 206,767 - +0.8 206,767 - +0.0 207,076 + GFF2537 0.14 -0.8 207,076 + GFF2537 0.14 +1.0 207,298 + GFF2537 0.32 -1.0 207,299 - GFF2537 0.32 +1.0 207,311 - GFF2537 0.33 +0.1 207,316 + GFF2537 0.33 -2.4 207,316 + GFF2537 0.33 +0.0 207,316 + GFF2537 0.33 +1.0 207,316 + GFF2537 0.33 -0.3 207,317 - GFF2537 0.33 +0.2 207,317 - GFF2537 0.33 -0.0 207,568 + GFF2537 0.53 -1.1 207,568 + GFF2537 0.53 +0.0 207,580 + GFF2537 0.54 -1.2 207,580 + GFF2537 0.54 +0.6 207,581 - GFF2537 0.54 +0.5 207,589 + GFF2537 0.55 +1.1 207,590 - GFF2537 0.55 -0.5 207,701 - GFF2537 0.64 -0.3 207,701 - GFF2537 0.64 +0.6 207,701 - GFF2537 0.64 -0.4 207,701 - GFF2537 0.64 +0.5 207,701 - GFF2537 0.64 +1.5 207,701 - GFF2537 0.64 -0.5 207,701 - GFF2537 0.64 +0.5 207,701 - GFF2537 0.64 -0.3 207,701 - GFF2537 0.64 -0.1 207,706 + GFF2537 0.64 -0.1 207,707 - GFF2537 0.64 +0.2 207,707 - GFF2537 0.64 +0.5 207,707 - GFF2537 0.64 +1.2 207,784 + GFF2537 0.71 +0.3 207,785 - GFF2537 0.71 +0.7 208,001 - GFF2537 0.88 +0.1 208,105 + +0.1 208,106 - -0.2 208,420 + -0.1 208,421 - +0.5 208,421 - +1.0 208,637 + +0.2 208,637 + +0.0 208,638 - -0.6 208,840 + GFF2538 0.18 +1.0 208,840 + GFF2538 0.18 +0.1 208,841 - GFF2538 0.18 -0.7 208,940 + GFF2538 0.26 +0.8 208,940 + GFF2538 0.26 -1.0 208,941 - GFF2538 0.27 -0.9
Or see this region's nucleotide sequence