Strain Fitness in Xanthobacter sp. DMC5 around GFF2521

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2520 and GFF2521 are separated by 177 nucleotidesGFF2521 and GFF2522 are separated by 45 nucleotides GFF2520 - Vitamin B12 import ATP-binding protein BtuD, at 182,073 to 184,598 GFF2520 GFF2521 - L-carnitine dehydrogenase, at 184,776 to 185,723 GFF2521 GFF2522 - 3-keto-5-aminohexanoate cleavage enzyme, at 185,769 to 186,719 GFF2522 Position (kb) 184 185 186Strain fitness (log2 ratio) -1 0 1 2at 183.831 kb on + strand, within GFF2520at 183.831 kb on + strand, within GFF2520at 183.831 kb on + strand, within GFF2520at 183.831 kb on + strand, within GFF2520at 183.831 kb on + strand, within GFF2520at 183.831 kb on + strand, within GFF2520at 183.831 kb on + strand, within GFF2520at 183.832 kb on - strand, within GFF2520at 183.832 kb on - strand, within GFF2520at 183.832 kb on - strand, within GFF2520at 183.832 kb on - strand, within GFF2520at 183.832 kb on - strand, within GFF2520at 183.832 kb on - strand, within GFF2520at 183.832 kb on - strand, within GFF2520at 183.832 kb on - strand, within GFF2520at 183.833 kb on + strand, within GFF2520at 183.896 kb on + strand, within GFF2520at 183.897 kb on - strand, within GFF2520at 183.897 kb on - strand, within GFF2520at 183.915 kb on - strand, within GFF2520at 183.928 kb on - strand, within GFF2520at 183.985 kb on + strand, within GFF2520at 183.986 kb on - strand, within GFF2520at 184.134 kb on + strand, within GFF2520at 184.135 kb on - strand, within GFF2520at 184.135 kb on - strand, within GFF2520at 184.613 kb on + strandat 184.902 kb on + strand, within GFF2521at 184.902 kb on + strand, within GFF2521at 184.902 kb on + strand, within GFF2521at 184.902 kb on + strand, within GFF2521at 184.903 kb on - strand, within GFF2521at 184.903 kb on - strand, within GFF2521at 184.903 kb on - strand, within GFF2521at 184.903 kb on - strand, within GFF2521at 184.998 kb on + strand, within GFF2521at 184.998 kb on + strand, within GFF2521at 185.073 kb on + strand, within GFF2521at 185.074 kb on - strand, within GFF2521at 185.074 kb on - strand, within GFF2521at 185.074 kb on - strand, within GFF2521at 185.209 kb on - strand, within GFF2521at 185.209 kb on - strand, within GFF2521at 185.398 kb on - strand, within GFF2521at 185.398 kb on - strand, within GFF2521at 185.512 kb on - strand, within GFF2521at 185.535 kb on + strand, within GFF2521at 185.535 kb on + strand, within GFF2521at 185.535 kb on + strand, within GFF2521at 185.536 kb on - strand, within GFF2521at 185.536 kb on - strand, within GFF2521at 185.536 kb on - strand, within GFF2521at 185.536 kb on - strand, within GFF2521at 185.536 kb on - strand, within GFF2521at 185.710 kb on - strandat 185.753 kb on + strandat 185.754 kb on - strandat 185.754 kb on - strandat 185.793 kb on + strandat 185.859 kb on + strandat 185.860 kb on - strandat 185.860 kb on - strandat 185.860 kb on - strandat 186.057 kb on + strand, within GFF2522at 186.057 kb on + strand, within GFF2522at 186.057 kb on + strand, within GFF2522at 186.057 kb on + strand, within GFF2522at 186.057 kb on + strand, within GFF2522at 186.057 kb on + strand, within GFF2522at 186.058 kb on - strand, within GFF2522at 186.058 kb on - strand, within GFF2522at 186.058 kb on - strand, within GFF2522at 186.058 kb on - strand, within GFF2522at 186.058 kb on - strand, within GFF2522at 186.058 kb on - strand, within GFF2522at 186.058 kb on - strand, within GFF2522at 186.058 kb on - strand, within GFF2522at 186.162 kb on - strand, within GFF2522at 186.162 kb on - strand, within GFF2522at 186.165 kb on + strand, within GFF2522at 186.165 kb on + strand, within GFF2522at 186.165 kb on + strand, within GFF2522at 186.244 kb on - strand, within GFF2522at 186.254 kb on + strand, within GFF2522at 186.255 kb on - strand, within GFF2522at 186.275 kb on + strand, within GFF2522at 186.304 kb on - strand, within GFF2522at 186.304 kb on - strand, within GFF2522at 186.308 kb on + strand, within GFF2522at 186.321 kb on + strand, within GFF2522at 186.321 kb on + strand, within GFF2522at 186.322 kb on - strand, within GFF2522at 186.469 kb on - strand, within GFF2522

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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183,831 + GFF2520 0.70 -0.8
183,831 + GFF2520 0.70 -0.3
183,831 + GFF2520 0.70 +0.7
183,831 + GFF2520 0.70 +0.2
183,831 + GFF2520 0.70 +0.4
183,831 + GFF2520 0.70 -0.3
183,831 + GFF2520 0.70 +0.4
183,832 - GFF2520 0.70 +1.9
183,832 - GFF2520 0.70 +0.2
183,832 - GFF2520 0.70 +1.0
183,832 - GFF2520 0.70 +0.9
183,832 - GFF2520 0.70 -1.0
183,832 - GFF2520 0.70 +0.4
183,832 - GFF2520 0.70 +1.1
183,832 - GFF2520 0.70 +0.9
183,833 + GFF2520 0.70 +0.4
183,896 + GFF2520 0.72 -0.1
183,897 - GFF2520 0.72 -0.0
183,897 - GFF2520 0.72 +1.1
183,915 - GFF2520 0.73 -0.8
183,928 - GFF2520 0.73 -0.0
183,985 + GFF2520 0.76 -0.1
183,986 - GFF2520 0.76 +0.5
184,134 + GFF2520 0.82 +0.5
184,135 - GFF2520 0.82 -1.4
184,135 - GFF2520 0.82 -1.4
184,613 + -0.8
184,902 + GFF2521 0.13 +0.5
184,902 + GFF2521 0.13 -0.3
184,902 + GFF2521 0.13 -0.0
184,902 + GFF2521 0.13 -0.5
184,903 - GFF2521 0.13 +1.1
184,903 - GFF2521 0.13 +0.0
184,903 - GFF2521 0.13 -1.0
184,903 - GFF2521 0.13 -0.4
184,998 + GFF2521 0.23 +1.0
184,998 + GFF2521 0.23 -0.2
185,073 + GFF2521 0.31 -0.6
185,074 - GFF2521 0.31 +0.4
185,074 - GFF2521 0.31 -0.5
185,074 - GFF2521 0.31 -0.2
185,209 - GFF2521 0.46 -0.1
185,209 - GFF2521 0.46 -0.2
185,398 - GFF2521 0.66 -0.0
185,398 - GFF2521 0.66 -0.3
185,512 - GFF2521 0.78 -0.7
185,535 + GFF2521 0.80 -0.0
185,535 + GFF2521 0.80 -0.0
185,535 + GFF2521 0.80 +1.7
185,536 - GFF2521 0.80 +0.1
185,536 - GFF2521 0.80 +0.6
185,536 - GFF2521 0.80 -0.0
185,536 - GFF2521 0.80 -0.1
185,536 - GFF2521 0.80 -0.2
185,710 - +0.6
185,753 + +0.4
185,754 - -0.4
185,754 - -0.4
185,793 + -0.6
185,859 + -0.1
185,860 - -0.4
185,860 - -0.8
185,860 - -0.2
186,057 + GFF2522 0.30 -0.6
186,057 + GFF2522 0.30 -0.2
186,057 + GFF2522 0.30 -1.7
186,057 + GFF2522 0.30 +0.0
186,057 + GFF2522 0.30 +0.6
186,057 + GFF2522 0.30 -0.2
186,058 - GFF2522 0.30 -0.9
186,058 - GFF2522 0.30 +1.4
186,058 - GFF2522 0.30 -0.1
186,058 - GFF2522 0.30 +0.2
186,058 - GFF2522 0.30 -0.6
186,058 - GFF2522 0.30 -0.2
186,058 - GFF2522 0.30 +0.0
186,058 - GFF2522 0.30 +1.5
186,162 - GFF2522 0.41 +0.8
186,162 - GFF2522 0.41 -0.6
186,165 + GFF2522 0.42 -0.7
186,165 + GFF2522 0.42 +0.1
186,165 + GFF2522 0.42 +0.4
186,244 - GFF2522 0.50 +0.5
186,254 + GFF2522 0.51 -0.8
186,255 - GFF2522 0.51 +0.2
186,275 + GFF2522 0.53 +0.2
186,304 - GFF2522 0.56 -0.1
186,304 - GFF2522 0.56 -0.6
186,308 + GFF2522 0.57 -0.8
186,321 + GFF2522 0.58 -0.5
186,321 + GFF2522 0.58 +1.3
186,322 - GFF2522 0.58 +0.2
186,469 - GFF2522 0.74 -0.3

Or see this region's nucleotide sequence