Strain Fitness in Xanthobacter sp. DMC5 around GFF2519

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2518 and GFF2519 are separated by 272 nucleotidesGFF2519 and GFF2520 are separated by 83 nucleotides GFF2518 - hypothetical protein, at 179,555 to 180,835 GFF2518 GFF2519 - High-affinity branched-chain amino acid transport system permease protein LivH, at 181,108 to 181,989 GFF2519 GFF2520 - Vitamin B12 import ATP-binding protein BtuD, at 182,073 to 184,598 GFF2520 Position (kb) 181 182Strain fitness (log2 ratio) -2 -1 0 1at 180.173 kb on + strand, within GFF2518at 180.173 kb on + strand, within GFF2518at 180.174 kb on - strand, within GFF2518at 180.174 kb on - strand, within GFF2518at 180.377 kb on - strand, within GFF2518at 180.530 kb on + strand, within GFF2518at 180.530 kb on + strand, within GFF2518at 180.530 kb on + strand, within GFF2518at 180.531 kb on - strand, within GFF2518at 180.531 kb on - strand, within GFF2518at 180.531 kb on - strand, within GFF2518at 180.650 kb on + strand, within GFF2518at 180.650 kb on + strand, within GFF2518at 180.650 kb on + strand, within GFF2518at 180.651 kb on - strand, within GFF2518at 180.651 kb on - strand, within GFF2518at 180.651 kb on - strand, within GFF2518at 180.651 kb on - strand, within GFF2518at 180.651 kb on - strand, within GFF2518at 180.689 kb on + strand, within GFF2518at 180.689 kb on + strand, within GFF2518at 180.689 kb on + strand, within GFF2518at 180.689 kb on + strand, within GFF2518at 180.689 kb on + strand, within GFF2518at 180.690 kb on - strand, within GFF2518at 180.690 kb on - strand, within GFF2518at 180.690 kb on - strand, within GFF2518at 180.690 kb on - strand, within GFF2518at 180.690 kb on - strand, within GFF2518at 180.690 kb on - strand, within GFF2518at 181.009 kb on + strandat 181.009 kb on + strandat 181.090 kb on + strandat 181.091 kb on - strandat 181.172 kb on - strandat 181.246 kb on + strand, within GFF2519at 181.246 kb on + strand, within GFF2519at 181.246 kb on + strand, within GFF2519at 181.261 kb on + strand, within GFF2519at 181.261 kb on + strand, within GFF2519at 181.261 kb on + strand, within GFF2519at 181.261 kb on + strand, within GFF2519at 181.262 kb on - strand, within GFF2519at 181.262 kb on - strand, within GFF2519at 181.263 kb on + strand, within GFF2519at 181.375 kb on + strand, within GFF2519at 181.375 kb on + strand, within GFF2519at 181.376 kb on - strand, within GFF2519at 181.525 kb on + strand, within GFF2519at 181.525 kb on + strand, within GFF2519at 181.526 kb on - strand, within GFF2519at 181.526 kb on - strand, within GFF2519at 181.678 kb on + strand, within GFF2519at 181.678 kb on + strand, within GFF2519at 181.679 kb on - strand, within GFF2519at 181.883 kb on - strand, within GFF2519at 181.883 kb on - strand, within GFF2519at 181.883 kb on - strand, within GFF2519at 181.883 kb on - strand, within GFF2519at 181.883 kb on - strand, within GFF2519at 181.915 kb on + strandat 181.915 kb on + strandat 181.915 kb on + strandat 181.915 kb on + strandat 181.915 kb on + strandat 181.916 kb on - strandat 181.916 kb on - strandat 181.916 kb on - strandat 181.916 kb on - strandat 182.275 kb on - strandat 182.376 kb on + strand, within GFF2520at 182.377 kb on - strand, within GFF2520at 182.403 kb on + strand, within GFF2520at 182.404 kb on - strand, within GFF2520at 182.442 kb on + strand, within GFF2520at 182.442 kb on + strand, within GFF2520at 182.443 kb on - strand, within GFF2520at 182.443 kb on - strand, within GFF2520at 182.443 kb on - strand, within GFF2520at 182.445 kb on - strand, within GFF2520at 182.537 kb on + strand, within GFF2520at 182.537 kb on + strand, within GFF2520at 182.537 kb on + strand, within GFF2520at 182.550 kb on + strand, within GFF2520at 182.550 kb on + strand, within GFF2520at 182.550 kb on + strand, within GFF2520at 182.551 kb on - strand, within GFF2520at 182.678 kb on + strand, within GFF2520at 182.688 kb on + strand, within GFF2520at 182.688 kb on + strand, within GFF2520at 182.688 kb on + strand, within GFF2520at 182.688 kb on + strand, within GFF2520at 182.689 kb on - strand, within GFF2520at 182.689 kb on - strand, within GFF2520at 182.689 kb on - strand, within GFF2520at 182.689 kb on - strand, within GFF2520at 182.689 kb on - strand, within GFF2520

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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180,173 + GFF2518 0.48 -2.0
180,173 + GFF2518 0.48 +0.9
180,174 - GFF2518 0.48 -0.3
180,174 - GFF2518 0.48 -0.4
180,377 - GFF2518 0.64 -0.3
180,530 + GFF2518 0.76 +0.1
180,530 + GFF2518 0.76 -1.8
180,530 + GFF2518 0.76 -0.5
180,531 - GFF2518 0.76 -0.5
180,531 - GFF2518 0.76 +1.3
180,531 - GFF2518 0.76 -0.7
180,650 + GFF2518 0.85 -1.0
180,650 + GFF2518 0.85 +0.1
180,650 + GFF2518 0.85 +1.0
180,651 - GFF2518 0.86 -0.8
180,651 - GFF2518 0.86 -0.0
180,651 - GFF2518 0.86 -1.3
180,651 - GFF2518 0.86 -0.7
180,651 - GFF2518 0.86 -0.1
180,689 + GFF2518 0.89 +0.3
180,689 + GFF2518 0.89 +1.0
180,689 + GFF2518 0.89 +0.5
180,689 + GFF2518 0.89 +0.2
180,689 + GFF2518 0.89 -0.5
180,690 - GFF2518 0.89 +0.1
180,690 - GFF2518 0.89 +0.6
180,690 - GFF2518 0.89 -1.0
180,690 - GFF2518 0.89 -0.3
180,690 - GFF2518 0.89 -0.4
180,690 - GFF2518 0.89 -0.5
181,009 + +1.0
181,009 + -0.1
181,090 + -0.4
181,091 - +0.2
181,172 - -0.1
181,246 + GFF2519 0.16 -1.3
181,246 + GFF2519 0.16 +0.7
181,246 + GFF2519 0.16 -0.5
181,261 + GFF2519 0.17 +0.1
181,261 + GFF2519 0.17 +0.1
181,261 + GFF2519 0.17 +0.2
181,261 + GFF2519 0.17 -1.8
181,262 - GFF2519 0.17 -0.4
181,262 - GFF2519 0.17 -0.7
181,263 + GFF2519 0.18 -0.3
181,375 + GFF2519 0.30 -0.4
181,375 + GFF2519 0.30 -0.2
181,376 - GFF2519 0.30 -0.7
181,525 + GFF2519 0.47 +0.8
181,525 + GFF2519 0.47 +0.3
181,526 - GFF2519 0.47 -0.1
181,526 - GFF2519 0.47 -0.7
181,678 + GFF2519 0.65 -0.4
181,678 + GFF2519 0.65 +0.7
181,679 - GFF2519 0.65 -0.5
181,883 - GFF2519 0.88 +0.6
181,883 - GFF2519 0.88 +1.1
181,883 - GFF2519 0.88 +0.9
181,883 - GFF2519 0.88 -1.0
181,883 - GFF2519 0.88 -0.4
181,915 + +0.1
181,915 + -0.4
181,915 + -1.1
181,915 + +0.4
181,915 + +1.5
181,916 - +0.5
181,916 - -1.0
181,916 - -0.9
181,916 - +0.0
182,275 - -0.9
182,376 + GFF2520 0.12 -0.0
182,377 - GFF2520 0.12 +0.3
182,403 + GFF2520 0.13 -2.7
182,404 - GFF2520 0.13 +1.2
182,442 + GFF2520 0.15 -0.0
182,442 + GFF2520 0.15 +0.5
182,443 - GFF2520 0.15 +0.3
182,443 - GFF2520 0.15 -0.2
182,443 - GFF2520 0.15 +1.1
182,445 - GFF2520 0.15 +0.5
182,537 + GFF2520 0.18 -1.4
182,537 + GFF2520 0.18 +0.3
182,537 + GFF2520 0.18 -1.1
182,550 + GFF2520 0.19 -0.5
182,550 + GFF2520 0.19 +0.0
182,550 + GFF2520 0.19 -0.5
182,551 - GFF2520 0.19 -0.5
182,678 + GFF2520 0.24 +0.2
182,688 + GFF2520 0.24 -1.1
182,688 + GFF2520 0.24 -0.2
182,688 + GFF2520 0.24 +0.0
182,688 + GFF2520 0.24 -0.5
182,689 - GFF2520 0.24 +0.6
182,689 - GFF2520 0.24 -1.2
182,689 - GFF2520 0.24 -0.5
182,689 - GFF2520 0.24 +0.3
182,689 - GFF2520 0.24 -0.8

Or see this region's nucleotide sequence