Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2494 and GFF2495 are separated by 56 nucleotides GFF2495 and GFF2496 are separated by 20 nucleotides GFF2496 and GFF2497 are separated by 7 nucleotides GFF2497 and GFF2498 are separated by 136 nucleotides
GFF2494 - Ferrous-iron efflux pump FieF, at 155,784 to 156,698
GFF2494
GFF2495 - hypothetical protein, at 156,755 to 156,958
GFF2495
GFF2496 - Isonitrile hydratase, at 156,979 to 157,683
GFF2496
GFF2497 - (3S)-malyl-CoA thioesterase, at 157,691 to 158,590
GFF2497
GFF2498 - hypothetical protein, at 158,727 to 159,938
GFF2498
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1
2 at 156.942 kb on + strand at 156.948 kb on + strand at 156.948 kb on + strand at 156.949 kb on - strand at 156.949 kb on - strand at 156.949 kb on - strand at 156.963 kb on - strand at 157.110 kb on - strand, within GFF2496 at 157.110 kb on - strand, within GFF2496 at 157.120 kb on + strand, within GFF2496 at 157.121 kb on - strand, within GFF2496 at 157.304 kb on + strand, within GFF2496 at 157.364 kb on + strand, within GFF2496 at 157.456 kb on + strand, within GFF2496 at 157.457 kb on - strand, within GFF2496 at 158.010 kb on + strand, within GFF2497 at 158.011 kb on - strand, within GFF2497 at 158.011 kb on - strand, within GFF2497 at 158.538 kb on + strand at 158.538 kb on + strand at 158.539 kb on - strand at 158.642 kb on + strand at 159.108 kb on - strand, within GFF2498 at 159.109 kb on + strand, within GFF2498 at 159.109 kb on + strand, within GFF2498 at 159.109 kb on + strand, within GFF2498 at 159.109 kb on + strand, within GFF2498 at 159.109 kb on + strand, within GFF2498 at 159.109 kb on + strand, within GFF2498 at 159.109 kb on + strand, within GFF2498 at 159.110 kb on - strand, within GFF2498 at 159.110 kb on - strand, within GFF2498 at 159.206 kb on - strand, within GFF2498 at 159.206 kb on - strand, within GFF2498 at 159.310 kb on + strand, within GFF2498 at 159.310 kb on + strand, within GFF2498 at 159.527 kb on - strand, within GFF2498 at 159.527 kb on - strand, within GFF2498
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 156,942 + +0.3 156,948 + -0.9 156,948 + +0.9 156,949 - +0.1 156,949 - -1.2 156,949 - -0.7 156,963 - -0.8 157,110 - GFF2496 0.19 -0.5 157,110 - GFF2496 0.19 +0.8 157,120 + GFF2496 0.20 +0.0 157,121 - GFF2496 0.20 -0.5 157,304 + GFF2496 0.46 +0.3 157,364 + GFF2496 0.55 -1.4 157,456 + GFF2496 0.68 -0.1 157,457 - GFF2496 0.68 -0.2 158,010 + GFF2497 0.35 +0.3 158,011 - GFF2497 0.36 -0.6 158,011 - GFF2497 0.36 -1.4 158,538 + -0.8 158,538 + -0.3 158,539 - -2.0 158,642 + +0.8 159,108 - GFF2498 0.31 +0.9 159,109 + GFF2498 0.32 -0.8 159,109 + GFF2498 0.32 -0.5 159,109 + GFF2498 0.32 -0.2 159,109 + GFF2498 0.32 +0.5 159,109 + GFF2498 0.32 +0.4 159,109 + GFF2498 0.32 -0.0 159,109 + GFF2498 0.32 -1.0 159,110 - GFF2498 0.32 -1.9 159,110 - GFF2498 0.32 -0.3 159,206 - GFF2498 0.40 -0.2 159,206 - GFF2498 0.40 -0.3 159,310 + GFF2498 0.48 +0.5 159,310 + GFF2498 0.48 +0.3 159,527 - GFF2498 0.66 -1.1 159,527 - GFF2498 0.66 +2.0
Or see this region's nucleotide sequence