Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2493 and GFF2494 are separated by 193 nucleotides GFF2494 and GFF2495 are separated by 56 nucleotides GFF2495 and GFF2496 are separated by 20 nucleotides GFF2496 and GFF2497 are separated by 7 nucleotides
GFF2493 - Beta-methylmalyl-CoA dehydratase, at 154,538 to 155,590
GFF2493
GFF2494 - Ferrous-iron efflux pump FieF, at 155,784 to 156,698
GFF2494
GFF2495 - hypothetical protein, at 156,755 to 156,958
GFF2495
GFF2496 - Isonitrile hydratase, at 156,979 to 157,683
GFF2496
GFF2497 - (3S)-malyl-CoA thioesterase, at 157,691 to 158,590
GFF2497
Position (kb) 155
156
157 Strain fitness (log2 ratio) -2
-1
0
1
2 at 154.846 kb on - strand, within GFF2493 at 154.917 kb on + strand, within GFF2493 at 155.169 kb on + strand, within GFF2493 at 155.169 kb on + strand, within GFF2493 at 155.169 kb on + strand, within GFF2493 at 155.217 kb on + strand, within GFF2493 at 155.217 kb on + strand, within GFF2493 at 155.217 kb on + strand, within GFF2493 at 155.218 kb on - strand, within GFF2493 at 155.295 kb on + strand, within GFF2493 at 155.325 kb on + strand, within GFF2493 at 155.475 kb on + strand, within GFF2493 at 155.476 kb on - strand, within GFF2493 at 155.476 kb on - strand, within GFF2493 at 155.476 kb on - strand, within GFF2493 at 155.488 kb on - strand at 155.488 kb on - strand at 155.592 kb on + strand at 155.592 kb on + strand at 155.592 kb on + strand at 155.593 kb on - strand at 155.593 kb on - strand at 155.853 kb on + strand at 155.854 kb on - strand at 155.985 kb on + strand, within GFF2494 at 155.985 kb on + strand, within GFF2494 at 155.986 kb on - strand, within GFF2494 at 155.986 kb on - strand, within GFF2494 at 155.986 kb on - strand, within GFF2494 at 155.986 kb on - strand, within GFF2494 at 155.986 kb on - strand, within GFF2494 at 155.991 kb on + strand, within GFF2494 at 155.991 kb on + strand, within GFF2494 at 156.316 kb on - strand, within GFF2494 at 156.318 kb on + strand, within GFF2494 at 156.319 kb on - strand, within GFF2494 at 156.363 kb on + strand, within GFF2494 at 156.372 kb on + strand, within GFF2494 at 156.373 kb on - strand, within GFF2494 at 156.373 kb on - strand, within GFF2494 at 156.942 kb on + strand at 156.948 kb on + strand at 156.948 kb on + strand at 156.949 kb on - strand at 156.949 kb on - strand at 156.949 kb on - strand at 156.963 kb on - strand at 157.110 kb on - strand, within GFF2496 at 157.110 kb on - strand, within GFF2496 at 157.120 kb on + strand, within GFF2496 at 157.121 kb on - strand, within GFF2496 at 157.304 kb on + strand, within GFF2496 at 157.364 kb on + strand, within GFF2496 at 157.456 kb on + strand, within GFF2496 at 157.457 kb on - strand, within GFF2496
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 154,846 - GFF2493 0.29 +0.8 154,917 + GFF2493 0.36 +1.0 155,169 + GFF2493 0.60 -0.1 155,169 + GFF2493 0.60 +1.3 155,169 + GFF2493 0.60 -0.2 155,217 + GFF2493 0.64 +0.7 155,217 + GFF2493 0.64 -2.6 155,217 + GFF2493 0.64 -0.9 155,218 - GFF2493 0.65 -0.3 155,295 + GFF2493 0.72 -0.0 155,325 + GFF2493 0.75 -0.3 155,475 + GFF2493 0.89 -0.0 155,476 - GFF2493 0.89 +0.1 155,476 - GFF2493 0.89 -1.8 155,476 - GFF2493 0.89 -0.1 155,488 - +0.3 155,488 - +1.8 155,592 + -0.6 155,592 + +1.5 155,592 + -0.2 155,593 - -0.5 155,593 - +0.3 155,853 + -0.3 155,854 - -0.5 155,985 + GFF2494 0.22 +0.4 155,985 + GFF2494 0.22 +0.3 155,986 - GFF2494 0.22 +1.0 155,986 - GFF2494 0.22 -0.9 155,986 - GFF2494 0.22 +0.9 155,986 - GFF2494 0.22 +1.2 155,986 - GFF2494 0.22 +1.4 155,991 + GFF2494 0.23 +0.5 155,991 + GFF2494 0.23 -0.0 156,316 - GFF2494 0.58 +0.0 156,318 + GFF2494 0.58 +0.2 156,319 - GFF2494 0.58 -1.3 156,363 + GFF2494 0.63 +1.6 156,372 + GFF2494 0.64 +0.4 156,373 - GFF2494 0.64 -1.2 156,373 - GFF2494 0.64 -0.3 156,942 + +0.3 156,948 + -0.9 156,948 + +0.9 156,949 - +0.1 156,949 - -1.2 156,949 - -0.7 156,963 - -0.8 157,110 - GFF2496 0.19 -0.5 157,110 - GFF2496 0.19 +0.8 157,120 + GFF2496 0.20 +0.0 157,121 - GFF2496 0.20 -0.5 157,304 + GFF2496 0.46 +0.3 157,364 + GFF2496 0.55 -1.4 157,456 + GFF2496 0.68 -0.1 157,457 - GFF2496 0.68 -0.2
Or see this region's nucleotide sequence