Strain Fitness in Xanthobacter sp. DMC5 around GFF2492

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2491 and GFF2492 are separated by 225 nucleotidesGFF2492 and GFF2493 overlap by 25 nucleotides GFF2491 - Outer membrane protein W, at 152,406 to 153,092 GFF2491 GFF2492 - hypothetical protein, at 153,318 to 154,562 GFF2492 GFF2493 - Beta-methylmalyl-CoA dehydratase, at 154,538 to 155,590 GFF2493 Position (kb) 153 154 155Strain fitness (log2 ratio) -2 -1 0 1 2at 152.324 kb on + strandat 152.470 kb on + strandat 152.470 kb on + strandat 152.657 kb on - strand, within GFF2491at 152.676 kb on - strand, within GFF2491at 152.677 kb on + strand, within GFF2491at 152.677 kb on + strand, within GFF2491at 152.677 kb on + strand, within GFF2491at 152.677 kb on + strand, within GFF2491at 152.678 kb on - strand, within GFF2491at 152.710 kb on + strand, within GFF2491at 152.711 kb on - strand, within GFF2491at 152.711 kb on - strand, within GFF2491at 152.829 kb on - strand, within GFF2491at 152.842 kb on + strand, within GFF2491at 152.843 kb on - strand, within GFF2491at 152.843 kb on - strand, within GFF2491at 152.843 kb on - strand, within GFF2491at 152.845 kb on + strand, within GFF2491at 152.846 kb on - strand, within GFF2491at 152.939 kb on - strand, within GFF2491at 152.998 kb on + strand, within GFF2491at 152.999 kb on - strand, within GFF2491at 153.012 kb on + strand, within GFF2491at 153.071 kb on + strandat 153.072 kb on - strandat 153.072 kb on - strandat 153.167 kb on + strandat 153.308 kb on + strandat 153.309 kb on - strandat 153.373 kb on + strandat 153.819 kb on + strand, within GFF2492at 153.820 kb on - strand, within GFF2492at 153.820 kb on - strand, within GFF2492at 153.820 kb on - strand, within GFF2492at 153.820 kb on - strand, within GFF2492at 153.820 kb on - strand, within GFF2492at 153.820 kb on - strand, within GFF2492at 153.927 kb on + strand, within GFF2492at 153.929 kb on + strand, within GFF2492at 153.929 kb on + strand, within GFF2492at 153.930 kb on - strand, within GFF2492at 154.002 kb on + strand, within GFF2492at 154.062 kb on + strand, within GFF2492at 154.063 kb on - strand, within GFF2492at 154.251 kb on - strand, within GFF2492at 154.320 kb on + strand, within GFF2492at 154.320 kb on + strand, within GFF2492at 154.320 kb on + strand, within GFF2492at 154.321 kb on - strand, within GFF2492at 154.590 kb on + strandat 154.846 kb on - strand, within GFF2493at 154.917 kb on + strand, within GFF2493at 155.169 kb on + strand, within GFF2493at 155.169 kb on + strand, within GFF2493at 155.169 kb on + strand, within GFF2493at 155.217 kb on + strand, within GFF2493at 155.217 kb on + strand, within GFF2493at 155.217 kb on + strand, within GFF2493at 155.218 kb on - strand, within GFF2493at 155.295 kb on + strand, within GFF2493at 155.325 kb on + strand, within GFF2493at 155.475 kb on + strand, within GFF2493at 155.476 kb on - strand, within GFF2493at 155.476 kb on - strand, within GFF2493at 155.476 kb on - strand, within GFF2493at 155.488 kb on - strandat 155.488 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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152,324 + -0.1
152,470 + +0.1
152,470 + +0.4
152,657 - GFF2491 0.37 +0.7
152,676 - GFF2491 0.39 -0.5
152,677 + GFF2491 0.39 -0.1
152,677 + GFF2491 0.39 +0.5
152,677 + GFF2491 0.39 -0.5
152,677 + GFF2491 0.39 +0.9
152,678 - GFF2491 0.40 -0.9
152,710 + GFF2491 0.44 -0.3
152,711 - GFF2491 0.44 +0.3
152,711 - GFF2491 0.44 +0.2
152,829 - GFF2491 0.62 +0.7
152,842 + GFF2491 0.63 -0.3
152,843 - GFF2491 0.64 -0.2
152,843 - GFF2491 0.64 -0.1
152,843 - GFF2491 0.64 -0.1
152,845 + GFF2491 0.64 +0.0
152,846 - GFF2491 0.64 +1.2
152,939 - GFF2491 0.78 +0.0
152,998 + GFF2491 0.86 +1.5
152,999 - GFF2491 0.86 +1.3
153,012 + GFF2491 0.88 -0.9
153,071 + +0.7
153,072 - +0.9
153,072 - -0.4
153,167 + +0.1
153,308 + -0.2
153,309 - -0.7
153,373 + +0.1
153,819 + GFF2492 0.40 -0.3
153,820 - GFF2492 0.40 +0.1
153,820 - GFF2492 0.40 -0.4
153,820 - GFF2492 0.40 -0.3
153,820 - GFF2492 0.40 -0.1
153,820 - GFF2492 0.40 +0.0
153,820 - GFF2492 0.40 -0.3
153,927 + GFF2492 0.49 +0.4
153,929 + GFF2492 0.49 -0.2
153,929 + GFF2492 0.49 +1.0
153,930 - GFF2492 0.49 -0.3
154,002 + GFF2492 0.55 -0.0
154,062 + GFF2492 0.60 +0.7
154,063 - GFF2492 0.60 -1.5
154,251 - GFF2492 0.75 +0.6
154,320 + GFF2492 0.80 -0.5
154,320 + GFF2492 0.80 +1.0
154,320 + GFF2492 0.80 +0.5
154,321 - GFF2492 0.81 +0.8
154,590 + +1.1
154,846 - GFF2493 0.29 +0.8
154,917 + GFF2493 0.36 +1.0
155,169 + GFF2493 0.60 -0.1
155,169 + GFF2493 0.60 +1.3
155,169 + GFF2493 0.60 -0.2
155,217 + GFF2493 0.64 +0.7
155,217 + GFF2493 0.64 -2.6
155,217 + GFF2493 0.64 -0.9
155,218 - GFF2493 0.65 -0.3
155,295 + GFF2493 0.72 -0.0
155,325 + GFF2493 0.75 -0.3
155,475 + GFF2493 0.89 -0.0
155,476 - GFF2493 0.89 +0.1
155,476 - GFF2493 0.89 -1.8
155,476 - GFF2493 0.89 -0.1
155,488 - +0.3
155,488 - +1.8

Or see this region's nucleotide sequence