Strain Fitness in Xanthobacter sp. DMC5 around GFF2481

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2480 and GFF2481 are separated by 22 nucleotidesGFF2481 and GFF2482 are separated by 191 nucleotides GFF2480 - hypothetical protein, at 139,783 to 141,189 GFF2480 GFF2481 - N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase, at 141,212 to 142,036 GFF2481 GFF2482 - hypothetical protein, at 142,228 to 143,106 GFF2482 Position (kb) 141 142 143Strain fitness (log2 ratio) -2 -1 0 1 2at 140.471 kb on + strand, within GFF2480at 140.471 kb on + strand, within GFF2480at 140.471 kb on + strand, within GFF2480at 140.471 kb on + strand, within GFF2480at 140.472 kb on - strand, within GFF2480at 140.472 kb on - strand, within GFF2480at 140.555 kb on + strand, within GFF2480at 140.591 kb on + strand, within GFF2480at 140.591 kb on + strand, within GFF2480at 140.591 kb on + strand, within GFF2480at 140.591 kb on + strand, within GFF2480at 140.591 kb on + strand, within GFF2480at 140.591 kb on + strand, within GFF2480at 140.591 kb on + strand, within GFF2480at 140.592 kb on - strand, within GFF2480at 140.592 kb on - strand, within GFF2480at 140.592 kb on - strand, within GFF2480at 140.592 kb on - strand, within GFF2480at 140.592 kb on - strand, within GFF2480at 140.592 kb on - strand, within GFF2480at 140.592 kb on - strand, within GFF2480at 140.592 kb on - strand, within GFF2480at 140.654 kb on + strand, within GFF2480at 140.654 kb on + strand, within GFF2480at 140.654 kb on + strand, within GFF2480at 140.654 kb on + strand, within GFF2480at 140.699 kb on + strand, within GFF2480at 140.699 kb on + strand, within GFF2480at 140.699 kb on + strand, within GFF2480at 140.700 kb on - strand, within GFF2480at 140.700 kb on - strand, within GFF2480at 140.700 kb on - strand, within GFF2480at 140.700 kb on - strand, within GFF2480at 140.700 kb on - strand, within GFF2480at 140.700 kb on - strand, within GFF2480at 140.786 kb on + strand, within GFF2480at 140.787 kb on - strand, within GFF2480at 140.787 kb on - strand, within GFF2480at 140.885 kb on + strand, within GFF2480at 140.886 kb on - strand, within GFF2480at 140.886 kb on - strand, within GFF2480at 140.886 kb on - strand, within GFF2480at 140.886 kb on - strand, within GFF2480at 140.903 kb on + strand, within GFF2480at 140.903 kb on + strand, within GFF2480at 140.903 kb on + strand, within GFF2480at 140.904 kb on - strand, within GFF2480at 140.904 kb on - strand, within GFF2480at 140.909 kb on + strand, within GFF2480at 140.910 kb on - strand, within GFF2480at 140.910 kb on - strand, within GFF2480at 140.979 kb on + strand, within GFF2480at 141.011 kb on + strand, within GFF2480at 141.014 kb on + strand, within GFF2480at 141.014 kb on + strand, within GFF2480at 141.014 kb on + strand, within GFF2480at 141.014 kb on + strand, within GFF2480at 141.015 kb on - strand, within GFF2480at 141.049 kb on + strandat 141.049 kb on + strandat 141.050 kb on - strandat 141.066 kb on + strandat 141.067 kb on - strandat 141.261 kb on + strandat 141.334 kb on + strand, within GFF2481at 141.335 kb on - strand, within GFF2481at 141.363 kb on + strand, within GFF2481at 141.363 kb on + strand, within GFF2481at 141.364 kb on - strand, within GFF2481at 141.364 kb on - strand, within GFF2481at 141.364 kb on - strand, within GFF2481at 141.364 kb on - strand, within GFF2481at 141.498 kb on + strand, within GFF2481at 141.498 kb on + strand, within GFF2481at 141.498 kb on + strand, within GFF2481at 141.498 kb on + strand, within GFF2481at 141.499 kb on - strand, within GFF2481at 141.499 kb on - strand, within GFF2481at 141.499 kb on - strand, within GFF2481at 141.534 kb on + strand, within GFF2481at 141.535 kb on - strand, within GFF2481at 141.711 kb on + strand, within GFF2481at 141.711 kb on + strand, within GFF2481at 141.711 kb on + strand, within GFF2481at 141.711 kb on + strand, within GFF2481at 141.711 kb on + strand, within GFF2481at 141.712 kb on - strand, within GFF2481at 141.712 kb on - strand, within GFF2481at 141.712 kb on - strand, within GFF2481at 141.712 kb on - strand, within GFF2481at 141.712 kb on - strand, within GFF2481at 141.712 kb on - strand, within GFF2481at 141.712 kb on - strand, within GFF2481at 141.834 kb on + strand, within GFF2481at 141.834 kb on + strand, within GFF2481at 141.834 kb on + strand, within GFF2481at 141.835 kb on - strand, within GFF2481at 141.835 kb on - strand, within GFF2481at 141.835 kb on - strand, within GFF2481at 141.835 kb on - strand, within GFF2481at 141.835 kb on - strand, within GFF2481at 141.835 kb on - strand, within GFF2481at 141.906 kb on + strand, within GFF2481at 141.906 kb on + strand, within GFF2481at 141.906 kb on + strand, within GFF2481at 141.906 kb on + strand, within GFF2481at 141.906 kb on + strand, within GFF2481at 141.906 kb on + strand, within GFF2481at 141.907 kb on - strand, within GFF2481at 141.907 kb on - strand, within GFF2481at 141.907 kb on - strand, within GFF2481at 141.907 kb on - strand, within GFF2481at 142.085 kb on - strandat 142.085 kb on - strandat 142.180 kb on + strandat 142.180 kb on + strandat 142.180 kb on + strandat 142.180 kb on + strandat 142.180 kb on + strandat 142.180 kb on + strandat 142.180 kb on + strandat 142.180 kb on + strandat 142.181 kb on - strandat 142.181 kb on - strandat 142.181 kb on - strandat 142.181 kb on - strandat 142.263 kb on - strandat 142.364 kb on + strand, within GFF2482at 142.365 kb on - strand, within GFF2482at 142.365 kb on - strand, within GFF2482at 142.365 kb on - strand, within GFF2482at 142.569 kb on - strand, within GFF2482at 142.569 kb on - strand, within GFF2482at 142.569 kb on - strand, within GFF2482at 142.601 kb on + strand, within GFF2482at 142.601 kb on + strand, within GFF2482at 142.601 kb on + strand, within GFF2482at 142.601 kb on + strand, within GFF2482at 142.601 kb on + strand, within GFF2482at 142.602 kb on - strand, within GFF2482at 142.602 kb on - strand, within GFF2482at 142.602 kb on - strand, within GFF2482at 142.602 kb on - strand, within GFF2482at 142.602 kb on - strand, within GFF2482at 142.682 kb on + strand, within GFF2482at 142.683 kb on - strand, within GFF2482at 142.799 kb on + strand, within GFF2482at 142.799 kb on + strand, within GFF2482at 142.800 kb on - strand, within GFF2482at 142.800 kb on - strand, within GFF2482at 142.836 kb on - strand, within GFF2482at 142.911 kb on + strand, within GFF2482at 142.911 kb on + strand, within GFF2482at 142.975 kb on + strand, within GFF2482at 142.975 kb on + strand, within GFF2482at 142.975 kb on + strand, within GFF2482at 142.975 kb on + strand, within GFF2482at 142.976 kb on - strand, within GFF2482at 142.976 kb on - strand, within GFF2482at 142.976 kb on - strand, within GFF2482

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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140,471 + GFF2480 0.49 -0.5
140,471 + GFF2480 0.49 -2.4
140,471 + GFF2480 0.49 -0.8
140,471 + GFF2480 0.49 +1.1
140,472 - GFF2480 0.49 -0.4
140,472 - GFF2480 0.49 +0.8
140,555 + GFF2480 0.55 +0.3
140,591 + GFF2480 0.57 +0.1
140,591 + GFF2480 0.57 -0.1
140,591 + GFF2480 0.57 +0.3
140,591 + GFF2480 0.57 +0.4
140,591 + GFF2480 0.57 -0.7
140,591 + GFF2480 0.57 -2.1
140,591 + GFF2480 0.57 -0.4
140,592 - GFF2480 0.57 -1.2
140,592 - GFF2480 0.57 +1.4
140,592 - GFF2480 0.57 -0.8
140,592 - GFF2480 0.57 +0.7
140,592 - GFF2480 0.57 +0.2
140,592 - GFF2480 0.57 +0.6
140,592 - GFF2480 0.57 -0.7
140,592 - GFF2480 0.57 +2.0
140,654 + GFF2480 0.62 -0.3
140,654 + GFF2480 0.62 -0.9
140,654 + GFF2480 0.62 +0.8
140,654 + GFF2480 0.62 +0.3
140,699 + GFF2480 0.65 +1.9
140,699 + GFF2480 0.65 +0.8
140,699 + GFF2480 0.65 +0.9
140,700 - GFF2480 0.65 -0.2
140,700 - GFF2480 0.65 -0.3
140,700 - GFF2480 0.65 +1.1
140,700 - GFF2480 0.65 -1.2
140,700 - GFF2480 0.65 -0.2
140,700 - GFF2480 0.65 +1.5
140,786 + GFF2480 0.71 +2.1
140,787 - GFF2480 0.71 -0.8
140,787 - GFF2480 0.71 -0.7
140,885 + GFF2480 0.78 -1.7
140,886 - GFF2480 0.78 +0.3
140,886 - GFF2480 0.78 +0.2
140,886 - GFF2480 0.78 -0.7
140,886 - GFF2480 0.78 +0.1
140,903 + GFF2480 0.80 +0.4
140,903 + GFF2480 0.80 +0.5
140,903 + GFF2480 0.80 +0.2
140,904 - GFF2480 0.80 +0.5
140,904 - GFF2480 0.80 -0.3
140,909 + GFF2480 0.80 -0.2
140,910 - GFF2480 0.80 -0.3
140,910 - GFF2480 0.80 +2.6
140,979 + GFF2480 0.85 +0.8
141,011 + GFF2480 0.87 -0.2
141,014 + GFF2480 0.87 +0.1
141,014 + GFF2480 0.87 +1.0
141,014 + GFF2480 0.87 +1.0
141,014 + GFF2480 0.87 +0.2
141,015 - GFF2480 0.88 -1.5
141,049 + -1.4
141,049 + -0.1
141,050 - -1.3
141,066 + -0.2
141,067 - +0.3
141,261 + -0.6
141,334 + GFF2481 0.15 +0.5
141,335 - GFF2481 0.15 +0.6
141,363 + GFF2481 0.18 +0.5
141,363 + GFF2481 0.18 -0.6
141,364 - GFF2481 0.18 +0.4
141,364 - GFF2481 0.18 -0.4
141,364 - GFF2481 0.18 -0.7
141,364 - GFF2481 0.18 -0.2
141,498 + GFF2481 0.35 -0.3
141,498 + GFF2481 0.35 -1.1
141,498 + GFF2481 0.35 -0.1
141,498 + GFF2481 0.35 +1.1
141,499 - GFF2481 0.35 -0.2
141,499 - GFF2481 0.35 +0.8
141,499 - GFF2481 0.35 +0.3
141,534 + GFF2481 0.39 -0.7
141,535 - GFF2481 0.39 -0.4
141,711 + GFF2481 0.60 -0.2
141,711 + GFF2481 0.60 -0.3
141,711 + GFF2481 0.60 -0.7
141,711 + GFF2481 0.60 -0.0
141,711 + GFF2481 0.60 +0.5
141,712 - GFF2481 0.61 -1.7
141,712 - GFF2481 0.61 +0.3
141,712 - GFF2481 0.61 +0.5
141,712 - GFF2481 0.61 +0.1
141,712 - GFF2481 0.61 +1.5
141,712 - GFF2481 0.61 -0.1
141,712 - GFF2481 0.61 -1.2
141,834 + GFF2481 0.75 +0.4
141,834 + GFF2481 0.75 -0.6
141,834 + GFF2481 0.75 -1.0
141,835 - GFF2481 0.76 +1.0
141,835 - GFF2481 0.76 -0.7
141,835 - GFF2481 0.76 +0.3
141,835 - GFF2481 0.76 -1.6
141,835 - GFF2481 0.76 -2.3
141,835 - GFF2481 0.76 -0.5
141,906 + GFF2481 0.84 -0.0
141,906 + GFF2481 0.84 -0.9
141,906 + GFF2481 0.84 -0.9
141,906 + GFF2481 0.84 +0.1
141,906 + GFF2481 0.84 -0.6
141,906 + GFF2481 0.84 +0.6
141,907 - GFF2481 0.84 +0.9
141,907 - GFF2481 0.84 +0.8
141,907 - GFF2481 0.84 -1.8
141,907 - GFF2481 0.84 -0.8
142,085 - +0.2
142,085 - +0.2
142,180 + -2.3
142,180 + -0.4
142,180 + -0.6
142,180 + +1.3
142,180 + +0.3
142,180 + -0.6
142,180 + -0.7
142,180 + +0.1
142,181 - -0.4
142,181 - +0.2
142,181 - -0.5
142,181 - +0.4
142,263 - -0.3
142,364 + GFF2482 0.15 +0.8
142,365 - GFF2482 0.16 +0.8
142,365 - GFF2482 0.16 +0.2
142,365 - GFF2482 0.16 -1.1
142,569 - GFF2482 0.39 +0.1
142,569 - GFF2482 0.39 -0.9
142,569 - GFF2482 0.39 -0.5
142,601 + GFF2482 0.42 -1.3
142,601 + GFF2482 0.42 +0.4
142,601 + GFF2482 0.42 +0.6
142,601 + GFF2482 0.42 -0.2
142,601 + GFF2482 0.42 +0.4
142,602 - GFF2482 0.43 +0.3
142,602 - GFF2482 0.43 -0.1
142,602 - GFF2482 0.43 -1.3
142,602 - GFF2482 0.43 -0.3
142,602 - GFF2482 0.43 +0.3
142,682 + GFF2482 0.52 -0.3
142,683 - GFF2482 0.52 +0.4
142,799 + GFF2482 0.65 -1.8
142,799 + GFF2482 0.65 +0.4
142,800 - GFF2482 0.65 -0.2
142,800 - GFF2482 0.65 +0.4
142,836 - GFF2482 0.69 +1.0
142,911 + GFF2482 0.78 -0.0
142,911 + GFF2482 0.78 +0.2
142,975 + GFF2482 0.85 +0.8
142,975 + GFF2482 0.85 -0.3
142,975 + GFF2482 0.85 -0.5
142,975 + GFF2482 0.85 +0.1
142,976 - GFF2482 0.85 +1.1
142,976 - GFF2482 0.85 +0.8
142,976 - GFF2482 0.85 -0.2

Or see this region's nucleotide sequence