Strain Fitness in Xanthobacter sp. DMC5 around GFF2480

Experiment: D,L-Lactate and casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Lactate and casaminos (C)
138,853	+		GFF2479	0.45	-0.3
138,853	+		GFF2479	0.45	+0.8
138,853	+		GFF2479	0.45	-0.6
138,853	+		GFF2479	0.45	-0.3
138,853	+		GFF2479	0.45	-1.1
138,853	+		GFF2479	0.45	+0.1
138,853	+		GFF2479	0.45	+0.3
138,853	+		GFF2479	0.45	+0.1
138,853	+		GFF2479	0.45	-0.1
138,853	+		GFF2479	0.45	+0.2
138,854	-		GFF2479	0.45	-0.5
138,854	-		GFF2479	0.45	-0.0
138,854	-		GFF2479	0.45	-0.4
138,854	-		GFF2479	0.45	+0.1
138,854	-		GFF2479	0.45	+0.4
138,854	-		GFF2479	0.45	+0.6
138,869	-		GFF2479	0.46	+2.0
138,869	-		GFF2479	0.46	+0.4
138,925	+		GFF2479	0.49	-2.5
138,925	+		GFF2479	0.49	+0.4
138,926	-		GFF2479	0.49	-0.2
138,946	+		GFF2479	0.50	+0.7
138,947	-		GFF2479	0.50	-1.4
139,075	+		GFF2479	0.58	-0.2
139,075	+		GFF2479	0.58	-0.2
139,076	-		GFF2479	0.58	-0.0
139,138	+		GFF2479	0.62	-1.4
139,138	+		GFF2479	0.62	-0.1
139,138	+		GFF2479	0.62	+1.3
139,138	+		GFF2479	0.62	+0.1
139,138	+		GFF2479	0.62	+0.3
139,138	+		GFF2479	0.62	+0.6
139,138	+		GFF2479	0.62	-0.3
139,138	+		GFF2479	0.62	+0.2
139,138	+		GFF2479	0.62	+1.1
139,139	-		GFF2479	0.62	+0.2
139,139	-		GFF2479	0.62	+1.3
139,228	+		GFF2479	0.67	-0.2
139,228	+		GFF2479	0.67	+0.1
139,228	+		GFF2479	0.67	+0.3
139,228	+		GFF2479	0.67	+0.1
139,228	+		GFF2479	0.67	+0.8
139,229	-		GFF2479	0.67	+0.7
139,237	+		GFF2479	0.68	+1.5
139,237	+		GFF2479	0.68	+0.8
139,291	+		GFF2479	0.71	-0.7
139,292	-		GFF2479	0.71	+0.4
139,292	-		GFF2479	0.71	+0.2
139,292	-		GFF2479	0.71	-0.2
139,292	-		GFF2479	0.71	+0.2
139,399	+		GFF2479	0.77	-1.1
139,399	+		GFF2479	0.77	+0.7
139,400	-		GFF2479	0.77	+1.7
139,516	+		GFF2479	0.84	-0.7
139,516	+		GFF2479	0.84	+0.3
139,517	-		GFF2479	0.84	-0.2
139,517	-		GFF2479	0.84	+1.3
139,534	+		GFF2479	0.85	-1.0
139,535	-		GFF2479	0.85	+1.2
139,535	-		GFF2479	0.85	-0.3
139,566	+		GFF2479	0.87	-1.5
139,566	+		GFF2479	0.87	-0.7
139,654	+				-0.3
139,655	-				-0.1
139,917	+				-0.0
139,917	+				-0.3
139,918	-				-0.6
139,918	-				-1.3
139,918	-				-0.8
139,918	-				-0.5
139,918	-				-0.2
139,919	+				+0.8
139,919	+				-0.2
139,919	+				-1.0
139,919	+				-0.3
139,919	+				+1.2
139,919	+				+0.1
139,919	+				+1.0
139,920	-				+0.8
139,920	-				+0.5
139,920	-				+0.9
139,920	-				-0.0
139,920	-				-0.2
139,920	-				-0.9
139,920	-				-0.8
139,920	-				+0.2
139,973	+		GFF2480	0.14	-0.0
139,997	+		GFF2480	0.15	-1.0
139,998	-		GFF2480	0.15	+0.5
139,998	-		GFF2480	0.15	-1.4
139,998	-		GFF2480	0.15	-0.5
139,998	-		GFF2480	0.15	+0.2
140,003	-		GFF2480	0.16	-1.2
140,006	+		GFF2480	0.16	+0.0
140,006	+		GFF2480	0.16	-0.5
140,006	+		GFF2480	0.16	-0.9
140,006	+		GFF2480	0.16	-0.2
140,006	+		GFF2480	0.16	+0.6
140,007	-		GFF2480	0.16	-0.9
140,007	-		GFF2480	0.16	-0.0
140,007	-		GFF2480	0.16	-1.0
140,117	+		GFF2480	0.24	-0.2
140,118	-		GFF2480	0.24	-0.1
140,156	+		GFF2480	0.27	+0.2
140,156	+		GFF2480	0.27	+0.2
140,156	+		GFF2480	0.27	+0.1
140,157	-		GFF2480	0.27	+0.1
140,157	-		GFF2480	0.27	+0.3
140,157	-		GFF2480	0.27	+0.3
140,471	+		GFF2480	0.49	-0.5
140,471	+		GFF2480	0.49	-2.4
140,471	+		GFF2480	0.49	-0.8
140,471	+		GFF2480	0.49	+1.1
140,472	-		GFF2480	0.49	-0.4
140,472	-		GFF2480	0.49	+0.8
140,555	+		GFF2480	0.55	+0.3
140,591	+		GFF2480	0.57	+0.1
140,591	+		GFF2480	0.57	-0.1
140,591	+		GFF2480	0.57	+0.3
140,591	+		GFF2480	0.57	+0.4
140,591	+		GFF2480	0.57	-0.7
140,591	+		GFF2480	0.57	-2.1
140,591	+		GFF2480	0.57	-0.4
140,592	-		GFF2480	0.57	-1.2
140,592	-		GFF2480	0.57	+1.4
140,592	-		GFF2480	0.57	-0.8
140,592	-		GFF2480	0.57	+0.7
140,592	-		GFF2480	0.57	+0.2
140,592	-		GFF2480	0.57	+0.6
140,592	-		GFF2480	0.57	-0.7
140,592	-		GFF2480	0.57	+2.0
140,654	+		GFF2480	0.62	-0.3
140,654	+		GFF2480	0.62	-0.9
140,654	+		GFF2480	0.62	+0.8
140,654	+		GFF2480	0.62	+0.3
140,699	+		GFF2480	0.65	+1.9
140,699	+		GFF2480	0.65	+0.8
140,699	+		GFF2480	0.65	+0.9
140,700	-		GFF2480	0.65	-0.2
140,700	-		GFF2480	0.65	-0.3
140,700	-		GFF2480	0.65	+1.1
140,700	-		GFF2480	0.65	-1.2
140,700	-		GFF2480	0.65	-0.2
140,700	-		GFF2480	0.65	+1.5
140,786	+		GFF2480	0.71	+2.1
140,787	-		GFF2480	0.71	-0.8
140,787	-		GFF2480	0.71	-0.7
140,885	+		GFF2480	0.78	-1.7
140,886	-		GFF2480	0.78	+0.3
140,886	-		GFF2480	0.78	+0.2
140,886	-		GFF2480	0.78	-0.7
140,886	-		GFF2480	0.78	+0.1
140,903	+		GFF2480	0.80	+0.4
140,903	+		GFF2480	0.80	+0.5
140,903	+		GFF2480	0.80	+0.2
140,904	-		GFF2480	0.80	+0.5
140,904	-		GFF2480	0.80	-0.3
140,909	+		GFF2480	0.80	-0.2
140,910	-		GFF2480	0.80	-0.3
140,910	-		GFF2480	0.80	+2.6
140,979	+		GFF2480	0.85	+0.8
141,011	+		GFF2480	0.87	-0.2
141,014	+		GFF2480	0.87	+0.1
141,014	+		GFF2480	0.87	+1.0
141,014	+		GFF2480	0.87	+1.0
141,014	+		GFF2480	0.87	+0.2
141,015	-		GFF2480	0.88	-1.5
141,049	+				-1.4
141,049	+				-0.1
141,050	-				-1.3
141,066	+				-0.2
141,067	-				+0.3
141,261	+				-0.6
141,334	+		GFF2481	0.15	+0.5
141,335	-		GFF2481	0.15	+0.6
141,363	+		GFF2481	0.18	+0.5
141,363	+		GFF2481	0.18	-0.6
141,364	-		GFF2481	0.18	+0.4
141,364	-		GFF2481	0.18	-0.4
141,364	-		GFF2481	0.18	-0.7
141,364	-		GFF2481	0.18	-0.2
141,498	+		GFF2481	0.35	-0.3
141,498	+		GFF2481	0.35	-1.1
141,498	+		GFF2481	0.35	-0.1
141,498	+		GFF2481	0.35	+1.1
141,499	-		GFF2481	0.35	-0.2
141,499	-		GFF2481	0.35	+0.8
141,499	-		GFF2481	0.35	+0.3
141,534	+		GFF2481	0.39	-0.7
141,535	-		GFF2481	0.39	-0.4
141,711	+		GFF2481	0.60	-0.2
141,711	+		GFF2481	0.60	-0.3
141,711	+		GFF2481	0.60	-0.7
141,711	+		GFF2481	0.60	-0.0
141,711	+		GFF2481	0.60	+0.5
141,712	-		GFF2481	0.61	-1.7
141,712	-		GFF2481	0.61	+0.3
141,712	-		GFF2481	0.61	+0.5
141,712	-		GFF2481	0.61	+0.1
141,712	-		GFF2481	0.61	+1.5
141,712	-		GFF2481	0.61	-0.1
141,712	-		GFF2481	0.61	-1.2
141,834	+		GFF2481	0.75	+0.4
141,834	+		GFF2481	0.75	-0.6
141,834	+		GFF2481	0.75	-1.0
141,835	-		GFF2481	0.76	+1.0
141,835	-		GFF2481	0.76	-0.7
141,835	-		GFF2481	0.76	+0.3
141,835	-		GFF2481	0.76	-1.6
141,835	-		GFF2481	0.76	-2.3
141,835	-		GFF2481	0.76	-0.5
141,906	+		GFF2481	0.84	-0.0
141,906	+		GFF2481	0.84	-0.9
141,906	+		GFF2481	0.84	-0.9
141,906	+		GFF2481	0.84	+0.1
141,906	+		GFF2481	0.84	-0.6
141,906	+		GFF2481	0.84	+0.6
141,907	-		GFF2481	0.84	+0.9
141,907	-		GFF2481	0.84	+0.8
141,907	-		GFF2481	0.84	-1.8
141,907	-		GFF2481	0.84	-0.8
142,085	-				+0.2
142,085	-				+0.2
142,180	+				-2.3
142,180	+				-0.4
142,180	+				-0.6
142,180	+				+1.3
142,180	+				+0.3
142,180	+				-0.6
142,180	+				-0.7
142,180	+				+0.1
142,181	-				-0.4
142,181	-				+0.2
142,181	-				-0.5
142,181	-				+0.4