Strain Fitness in Xanthobacter sp. DMC5 around GFF248

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF247 and GFF248 are separated by 426 nucleotidesGFF248 and GFF249 are separated by 80 nucleotides GFF247 - Acetoin dehydrogenase operon transcriptional activator AcoR, at 257,209 to 259,113 GFF247 GFF248 - Acetone carboxylase beta subunit, at 259,540 to 261,693 GFF248 GFF249 - Acetone carboxylase alpha subunit, at 261,774 to 264,104 GFF249 Position (kb) 259 260 261 262Strain fitness (log2 ratio) -2 -1 0 1 2at 259.230 kb on + strandat 259.230 kb on + strandat 259.230 kb on + strandat 259.231 kb on - strandat 259.231 kb on - strandat 259.231 kb on - strandat 259.404 kb on - strandat 259.768 kb on + strand, within GFF248at 259.891 kb on + strand, within GFF248at 259.891 kb on + strand, within GFF248at 259.891 kb on + strand, within GFF248at 259.892 kb on - strand, within GFF248at 259.892 kb on - strand, within GFF248at 259.897 kb on + strand, within GFF248at 259.897 kb on + strand, within GFF248at 259.897 kb on + strand, within GFF248at 259.897 kb on + strand, within GFF248at 259.897 kb on + strand, within GFF248at 259.897 kb on + strand, within GFF248at 259.898 kb on - strand, within GFF248at 259.898 kb on - strand, within GFF248at 259.930 kb on + strand, within GFF248at 259.980 kb on + strand, within GFF248at 259.985 kb on - strand, within GFF248at 260.192 kb on - strand, within GFF248at 260.245 kb on + strand, within GFF248at 260.422 kb on + strand, within GFF248at 260.423 kb on - strand, within GFF248at 260.443 kb on + strand, within GFF248at 260.443 kb on + strand, within GFF248at 260.444 kb on - strand, within GFF248at 260.621 kb on - strand, within GFF248at 260.734 kb on + strand, within GFF248at 260.734 kb on + strand, within GFF248at 260.735 kb on - strand, within GFF248at 260.890 kb on + strand, within GFF248at 260.921 kb on - strand, within GFF248at 260.921 kb on - strand, within GFF248at 260.950 kb on + strand, within GFF248at 260.950 kb on + strand, within GFF248at 260.950 kb on + strand, within GFF248at 260.951 kb on - strand, within GFF248at 260.977 kb on + strand, within GFF248at 260.977 kb on + strand, within GFF248at 260.977 kb on + strand, within GFF248at 260.977 kb on + strand, within GFF248at 260.977 kb on + strand, within GFF248at 260.977 kb on + strand, within GFF248at 260.977 kb on + strand, within GFF248at 260.978 kb on - strand, within GFF248at 260.978 kb on - strand, within GFF248at 260.978 kb on - strand, within GFF248at 260.983 kb on + strand, within GFF248at 261.074 kb on - strand, within GFF248at 261.080 kb on - strand, within GFF248at 261.080 kb on - strand, within GFF248at 261.080 kb on - strand, within GFF248at 261.212 kb on - strand, within GFF248at 261.256 kb on + strand, within GFF248at 261.355 kb on + strand, within GFF248at 261.355 kb on + strand, within GFF248at 261.355 kb on + strand, within GFF248at 261.356 kb on - strand, within GFF248at 261.356 kb on - strand, within GFF248at 261.356 kb on - strand, within GFF248at 261.367 kb on + strand, within GFF248at 261.367 kb on + strand, within GFF248at 261.367 kb on + strand, within GFF248at 261.400 kb on + strand, within GFF248at 261.400 kb on + strand, within GFF248at 261.401 kb on - strand, within GFF248at 261.553 kb on + strandat 261.553 kb on + strandat 261.554 kb on - strandat 261.675 kb on - strandat 261.812 kb on + strandat 261.813 kb on - strandat 261.895 kb on - strandat 261.943 kb on - strandat 261.943 kb on - strandat 262.057 kb on - strand, within GFF249at 262.135 kb on - strand, within GFF249at 262.135 kb on - strand, within GFF249at 262.135 kb on - strand, within GFF249at 262.135 kb on - strand, within GFF249at 262.135 kb on - strand, within GFF249at 262.215 kb on - strand, within GFF249at 262.308 kb on - strand, within GFF249at 262.369 kb on - strand, within GFF249at 262.458 kb on + strand, within GFF249at 262.551 kb on + strand, within GFF249at 262.551 kb on + strand, within GFF249at 262.566 kb on + strand, within GFF249at 262.567 kb on - strand, within GFF249at 262.635 kb on + strand, within GFF249at 262.636 kb on - strand, within GFF249

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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259,230 + +0.2
259,230 + -2.3
259,230 + -0.6
259,231 - -0.7
259,231 - -0.2
259,231 - -1.1
259,404 - -0.8
259,768 + GFF248 0.11 -1.6
259,891 + GFF248 0.16 -0.6
259,891 + GFF248 0.16 +0.9
259,891 + GFF248 0.16 -0.4
259,892 - GFF248 0.16 -0.1
259,892 - GFF248 0.16 +0.7
259,897 + GFF248 0.17 -0.4
259,897 + GFF248 0.17 -1.2
259,897 + GFF248 0.17 -1.8
259,897 + GFF248 0.17 -0.1
259,897 + GFF248 0.17 -1.2
259,897 + GFF248 0.17 +0.2
259,898 - GFF248 0.17 +0.1
259,898 - GFF248 0.17 +1.7
259,930 + GFF248 0.18 +0.1
259,980 + GFF248 0.20 +0.0
259,985 - GFF248 0.21 -0.4
260,192 - GFF248 0.30 -0.8
260,245 + GFF248 0.33 -1.0
260,422 + GFF248 0.41 -1.0
260,423 - GFF248 0.41 -1.0
260,443 + GFF248 0.42 -0.8
260,443 + GFF248 0.42 -0.1
260,444 - GFF248 0.42 -0.1
260,621 - GFF248 0.50 +0.2
260,734 + GFF248 0.55 +0.2
260,734 + GFF248 0.55 -0.6
260,735 - GFF248 0.55 -0.3
260,890 + GFF248 0.63 +1.2
260,921 - GFF248 0.64 -0.7
260,921 - GFF248 0.64 +1.1
260,950 + GFF248 0.65 -1.0
260,950 + GFF248 0.65 -0.7
260,950 + GFF248 0.65 +0.4
260,951 - GFF248 0.66 -0.1
260,977 + GFF248 0.67 +0.8
260,977 + GFF248 0.67 +0.3
260,977 + GFF248 0.67 +0.9
260,977 + GFF248 0.67 -0.7
260,977 + GFF248 0.67 -2.4
260,977 + GFF248 0.67 -0.2
260,977 + GFF248 0.67 +0.5
260,978 - GFF248 0.67 -0.3
260,978 - GFF248 0.67 -1.0
260,978 - GFF248 0.67 +0.2
260,983 + GFF248 0.67 +0.1
261,074 - GFF248 0.71 +0.4
261,080 - GFF248 0.71 -0.5
261,080 - GFF248 0.71 +0.1
261,080 - GFF248 0.71 -1.2
261,212 - GFF248 0.78 -0.3
261,256 + GFF248 0.80 +0.2
261,355 + GFF248 0.84 -0.5
261,355 + GFF248 0.84 +0.1
261,355 + GFF248 0.84 +0.2
261,356 - GFF248 0.84 -0.4
261,356 - GFF248 0.84 -0.9
261,356 - GFF248 0.84 -1.0
261,367 + GFF248 0.85 -0.6
261,367 + GFF248 0.85 -0.4
261,367 + GFF248 0.85 +0.6
261,400 + GFF248 0.86 -1.3
261,400 + GFF248 0.86 +0.2
261,401 - GFF248 0.86 +1.8
261,553 + -1.1
261,553 + +0.2
261,554 - +1.1
261,675 - -1.1
261,812 + -1.0
261,813 - -1.5
261,895 - -0.2
261,943 - +0.8
261,943 - -2.5
262,057 - GFF249 0.12 -1.0
262,135 - GFF249 0.15 +0.1
262,135 - GFF249 0.15 -1.5
262,135 - GFF249 0.15 -0.5
262,135 - GFF249 0.15 -0.3
262,135 - GFF249 0.15 -0.5
262,215 - GFF249 0.19 -0.1
262,308 - GFF249 0.23 -0.8
262,369 - GFF249 0.26 -0.9
262,458 + GFF249 0.29 -0.4
262,551 + GFF249 0.33 -0.6
262,551 + GFF249 0.33 +0.2
262,566 + GFF249 0.34 +0.1
262,567 - GFF249 0.34 -1.2
262,635 + GFF249 0.37 +0.1
262,636 - GFF249 0.37 -0.9

Or see this region's nucleotide sequence