Strain Fitness in Xanthobacter sp. DMC5 around GFF2470

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2469 and GFF2470 are separated by 421 nucleotidesGFF2470 and GFF2471 are separated by 36 nucleotides GFF2469 - hypothetical protein, at 126,637 to 127,782 GFF2469 GFF2470 - hypothetical protein, at 128,204 to 128,356 GFF2470 GFF2471 - NAD(P) transhydrogenase subunit alpha part 1, at 128,393 to 129,556 GFF2471 Position (kb) 128 129Strain fitness (log2 ratio) -2 -1 0 1at 127.304 kb on + strand, within GFF2469at 127.305 kb on - strand, within GFF2469at 127.314 kb on + strand, within GFF2469at 127.346 kb on + strand, within GFF2469at 127.346 kb on + strand, within GFF2469at 127.346 kb on + strand, within GFF2469at 127.346 kb on + strand, within GFF2469at 127.346 kb on + strand, within GFF2469at 127.347 kb on - strand, within GFF2469at 127.347 kb on - strand, within GFF2469at 127.347 kb on - strand, within GFF2469at 127.347 kb on - strand, within GFF2469at 127.347 kb on - strand, within GFF2469at 127.347 kb on - strand, within GFF2469at 127.347 kb on - strand, within GFF2469at 127.347 kb on - strand, within GFF2469at 127.442 kb on + strand, within GFF2469at 127.442 kb on + strand, within GFF2469at 127.469 kb on + strand, within GFF2469at 127.469 kb on + strand, within GFF2469at 127.470 kb on - strand, within GFF2469at 127.470 kb on - strand, within GFF2469at 127.470 kb on - strand, within GFF2469at 127.496 kb on + strand, within GFF2469at 127.865 kb on - strandat 127.865 kb on - strandat 128.046 kb on + strandat 128.187 kb on - strandat 128.200 kb on + strandat 128.200 kb on + strandat 128.201 kb on - strandat 128.201 kb on - strandat 128.201 kb on - strandat 128.273 kb on + strand, within GFF2470at 128.274 kb on - strand, within GFF2470at 128.274 kb on - strand, within GFF2470at 128.274 kb on - strand, within GFF2470at 128.455 kb on + strandat 128.604 kb on + strand, within GFF2471at 128.605 kb on - strand, within GFF2471at 128.646 kb on - strand, within GFF2471at 128.814 kb on - strand, within GFF2471

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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127,304 + GFF2469 0.58 +0.4
127,305 - GFF2469 0.58 -0.5
127,314 + GFF2469 0.59 +1.5
127,346 + GFF2469 0.62 -0.0
127,346 + GFF2469 0.62 +0.2
127,346 + GFF2469 0.62 -2.5
127,346 + GFF2469 0.62 +0.1
127,346 + GFF2469 0.62 -0.1
127,347 - GFF2469 0.62 -2.0
127,347 - GFF2469 0.62 +1.7
127,347 - GFF2469 0.62 +0.2
127,347 - GFF2469 0.62 +0.0
127,347 - GFF2469 0.62 -0.7
127,347 - GFF2469 0.62 +0.1
127,347 - GFF2469 0.62 +0.1
127,347 - GFF2469 0.62 +1.5
127,442 + GFF2469 0.70 -0.8
127,442 + GFF2469 0.70 -0.9
127,469 + GFF2469 0.73 +1.2
127,469 + GFF2469 0.73 -0.5
127,470 - GFF2469 0.73 -0.6
127,470 - GFF2469 0.73 +0.6
127,470 - GFF2469 0.73 -0.9
127,496 + GFF2469 0.75 -0.5
127,865 - -0.1
127,865 - -0.0
128,046 + -0.1
128,187 - -1.6
128,200 + -0.5
128,200 + +1.5
128,201 - -0.4
128,201 - +1.1
128,201 - -0.3
128,273 + GFF2470 0.45 -0.9
128,274 - GFF2470 0.46 -0.3
128,274 - GFF2470 0.46 -1.9
128,274 - GFF2470 0.46 -2.1
128,455 + -0.3
128,604 + GFF2471 0.18 +0.8
128,605 - GFF2471 0.18 -0.4
128,646 - GFF2471 0.22 +0.7
128,814 - GFF2471 0.36 +0.7

Or see this region's nucleotide sequence