Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF243 and GFF244 are separated by 213 nucleotides GFF244 and GFF245 are separated by 108 nucleotides GFF245 and GFF246 are separated by 37 nucleotides GFF246 and GFF247 are separated by 82 nucleotides
GFF243 - Non-homologous end joining protein Ku, at 254,093 to 254,995
GFF243
GFF244 - hypothetical protein, at 255,209 to 255,493
GFF244
GFF245 - Delta(1)-pyrroline-2-carboxylate reductase, at 255,602 to 256,537
GFF245
GFF246 - Thioredoxin/glutathione peroxidase BtuE, at 256,575 to 257,126
GFF246
GFF247 - Acetoin dehydrogenase operon transcriptional activator AcoR, at 257,209 to 259,113
GFF247
Position (kb) 255
256
257 Strain fitness (log2 ratio) -2
-1
0
1 at 254.673 kb on + strand, within GFF243 at 254.673 kb on + strand, within GFF243 at 254.716 kb on - strand, within GFF243 at 254.775 kb on + strand, within GFF243 at 254.775 kb on + strand, within GFF243 at 254.775 kb on + strand, within GFF243 at 254.775 kb on + strand, within GFF243 at 254.797 kb on - strand, within GFF243 at 254.850 kb on + strand, within GFF243 at 254.850 kb on + strand, within GFF243 at 254.850 kb on + strand, within GFF243 at 254.850 kb on + strand, within GFF243 at 254.851 kb on - strand, within GFF243 at 254.851 kb on - strand, within GFF243 at 255.019 kb on + strand at 255.019 kb on + strand at 255.020 kb on - strand at 255.231 kb on + strand at 255.231 kb on + strand at 255.231 kb on + strand at 255.232 kb on - strand at 255.232 kb on - strand at 255.232 kb on - strand at 255.573 kb on + strand at 255.857 kb on + strand, within GFF245 at 255.857 kb on + strand, within GFF245 at 255.857 kb on + strand, within GFF245 at 255.857 kb on + strand, within GFF245 at 255.858 kb on - strand, within GFF245 at 256.319 kb on + strand, within GFF245 at 256.319 kb on + strand, within GFF245 at 256.319 kb on + strand, within GFF245 at 256.320 kb on - strand, within GFF245 at 256.320 kb on - strand, within GFF245 at 256.320 kb on - strand, within GFF245 at 256.331 kb on + strand, within GFF245 at 256.331 kb on + strand, within GFF245 at 256.331 kb on + strand, within GFF245 at 256.331 kb on + strand, within GFF245 at 256.332 kb on - strand, within GFF245 at 256.332 kb on - strand, within GFF245 at 256.419 kb on - strand, within GFF245 at 256.419 kb on - strand, within GFF245 at 256.536 kb on - strand at 256.536 kb on - strand at 256.804 kb on + strand, within GFF246 at 256.804 kb on + strand, within GFF246 at 256.867 kb on + strand, within GFF246 at 256.978 kb on + strand, within GFF246 at 256.978 kb on + strand, within GFF246 at 256.999 kb on + strand, within GFF246 at 257.243 kb on + strand at 257.243 kb on + strand at 257.244 kb on - strand at 257.244 kb on - strand at 257.335 kb on + strand at 257.335 kb on + strand at 257.336 kb on - strand at 257.489 kb on + strand, within GFF247 at 257.489 kb on + strand, within GFF247
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 254,673 + GFF243 0.64 +0.3 254,673 + GFF243 0.64 +0.1 254,716 - GFF243 0.69 +0.5 254,775 + GFF243 0.76 -1.0 254,775 + GFF243 0.76 +0.5 254,775 + GFF243 0.76 +0.7 254,775 + GFF243 0.76 +0.5 254,797 - GFF243 0.78 -1.5 254,850 + GFF243 0.84 -0.9 254,850 + GFF243 0.84 -1.8 254,850 + GFF243 0.84 -0.4 254,850 + GFF243 0.84 +0.2 254,851 - GFF243 0.84 +0.7 254,851 - GFF243 0.84 +1.1 255,019 + -0.2 255,019 + +0.9 255,020 - +0.3 255,231 + -0.5 255,231 + +0.2 255,231 + -1.7 255,232 - -1.2 255,232 - +0.5 255,232 - -1.3 255,573 + +0.9 255,857 + GFF245 0.27 +0.6 255,857 + GFF245 0.27 -1.1 255,857 + GFF245 0.27 -0.2 255,857 + GFF245 0.27 +0.9 255,858 - GFF245 0.27 +0.5 256,319 + GFF245 0.77 -0.0 256,319 + GFF245 0.77 -0.4 256,319 + GFF245 0.77 +0.5 256,320 - GFF245 0.77 -1.0 256,320 - GFF245 0.77 -0.8 256,320 - GFF245 0.77 +0.2 256,331 + GFF245 0.78 -0.1 256,331 + GFF245 0.78 -2.0 256,331 + GFF245 0.78 -1.0 256,331 + GFF245 0.78 +1.6 256,332 - GFF245 0.78 -0.3 256,332 - GFF245 0.78 +0.5 256,419 - GFF245 0.87 +0.2 256,419 - GFF245 0.87 -1.0 256,536 - -0.3 256,536 - -0.6 256,804 + GFF246 0.41 -0.5 256,804 + GFF246 0.41 -0.3 256,867 + GFF246 0.53 -0.5 256,978 + GFF246 0.73 +0.1 256,978 + GFF246 0.73 -0.4 256,999 + GFF246 0.77 +0.7 257,243 + -0.4 257,243 + +0.7 257,244 - +0.9 257,244 - +0.4 257,335 + -0.4 257,335 + +0.2 257,336 - +0.4 257,489 + GFF247 0.15 -0.6 257,489 + GFF247 0.15 +0.0
Or see this region's nucleotide sequence