Strain Fitness in Xanthobacter sp. DMC5 around GFF2422

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2420 and GFF2421 are separated by 303 nucleotidesGFF2421 and GFF2422 are separated by 119 nucleotidesGFF2422 and GFF2423 are separated by 111 nucleotides GFF2420 - Porin B, at 75,382 to 76,782 GFF2420 GFF2421 - hypothetical protein, at 77,086 to 77,268 GFF2421 GFF2422 - Ferrichrome outer membrane transporter/phage receptor, at 77,388 to 79,883 GFF2422 GFF2423 - Protein FecR, at 79,995 to 80,960 GFF2423 Position (kb) 77 78 79 80Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 76.438 kb on + strand, within GFF2420at 76.438 kb on + strand, within GFF2420at 76.438 kb on + strand, within GFF2420at 76.438 kb on + strand, within GFF2420at 76.438 kb on + strand, within GFF2420at 76.439 kb on - strand, within GFF2420at 76.439 kb on - strand, within GFF2420at 76.439 kb on - strand, within GFF2420at 76.468 kb on + strand, within GFF2420at 76.469 kb on - strand, within GFF2420at 76.469 kb on - strand, within GFF2420at 76.469 kb on - strand, within GFF2420at 76.469 kb on - strand, within GFF2420at 76.469 kb on - strand, within GFF2420at 76.469 kb on - strand, within GFF2420at 76.615 kb on + strand, within GFF2420at 76.616 kb on - strand, within GFF2420at 76.633 kb on + strand, within GFF2420at 76.633 kb on + strand, within GFF2420at 76.633 kb on + strand, within GFF2420at 76.633 kb on + strand, within GFF2420at 76.634 kb on - strand, within GFF2420at 76.634 kb on - strand, within GFF2420at 76.634 kb on - strand, within GFF2420at 76.634 kb on - strand, within GFF2420at 76.648 kb on + strandat 76.649 kb on - strandat 76.649 kb on - strandat 76.651 kb on + strandat 76.651 kb on + strandat 76.652 kb on - strandat 76.699 kb on + strandat 76.699 kb on + strandat 76.699 kb on + strandat 76.699 kb on + strandat 76.700 kb on - strandat 76.700 kb on - strandat 76.700 kb on - strandat 76.700 kb on - strandat 76.700 kb on - strandat 76.720 kb on + strandat 76.721 kb on - strandat 76.721 kb on - strandat 76.882 kb on - strandat 76.889 kb on - strandat 76.993 kb on + strandat 77.190 kb on + strand, within GFF2421at 77.190 kb on + strand, within GFF2421at 77.191 kb on - strand, within GFF2421at 77.228 kb on + strand, within GFF2421at 77.228 kb on + strand, within GFF2421at 77.228 kb on + strand, within GFF2421at 77.229 kb on - strand, within GFF2421at 77.229 kb on - strand, within GFF2421at 77.266 kb on + strandat 77.266 kb on + strandat 77.266 kb on + strandat 77.267 kb on - strandat 77.267 kb on - strandat 77.323 kb on + strandat 77.346 kb on + strandat 77.356 kb on - strandat 77.398 kb on + strandat 77.399 kb on - strandat 77.399 kb on - strandat 77.413 kb on + strandat 77.434 kb on + strandat 77.434 kb on + strandat 77.435 kb on - strandat 77.435 kb on - strandat 77.435 kb on - strandat 77.453 kb on - strandat 77.468 kb on - strandat 77.471 kb on - strandat 77.484 kb on + strandat 77.484 kb on + strandat 77.484 kb on + strandat 77.485 kb on - strandat 77.486 kb on + strandat 77.487 kb on - strandat 77.521 kb on - strandat 77.521 kb on - strandat 77.573 kb on + strandat 77.575 kb on + strandat 77.575 kb on + strandat 77.576 kb on - strandat 77.638 kb on + strand, within GFF2422at 77.639 kb on - strand, within GFF2422at 77.692 kb on + strand, within GFF2422at 77.692 kb on + strand, within GFF2422at 77.692 kb on + strand, within GFF2422at 77.693 kb on - strand, within GFF2422at 77.693 kb on - strand, within GFF2422at 77.693 kb on - strand, within GFF2422at 77.695 kb on + strand, within GFF2422at 77.695 kb on + strand, within GFF2422at 77.696 kb on - strand, within GFF2422at 77.696 kb on - strand, within GFF2422at 77.696 kb on - strand, within GFF2422at 77.696 kb on - strand, within GFF2422at 77.800 kb on + strand, within GFF2422at 77.801 kb on - strand, within GFF2422at 77.801 kb on - strand, within GFF2422at 77.801 kb on - strand, within GFF2422at 77.801 kb on - strand, within GFF2422at 77.806 kb on + strand, within GFF2422at 77.806 kb on + strand, within GFF2422at 77.807 kb on - strand, within GFF2422at 77.807 kb on - strand, within GFF2422at 77.807 kb on - strand, within GFF2422at 77.807 kb on - strand, within GFF2422at 77.807 kb on - strand, within GFF2422at 77.807 kb on - strand, within GFF2422at 77.807 kb on - strand, within GFF2422at 77.816 kb on + strand, within GFF2422at 77.816 kb on + strand, within GFF2422at 77.817 kb on - strand, within GFF2422at 77.819 kb on + strand, within GFF2422at 77.820 kb on - strand, within GFF2422at 77.896 kb on + strand, within GFF2422at 77.897 kb on - strand, within GFF2422at 77.897 kb on - strand, within GFF2422at 77.989 kb on + strand, within GFF2422at 77.989 kb on + strand, within GFF2422at 77.990 kb on - strand, within GFF2422at 77.990 kb on - strand, within GFF2422at 77.990 kb on - strand, within GFF2422at 77.990 kb on - strand, within GFF2422at 78.007 kb on + strand, within GFF2422at 78.007 kb on + strand, within GFF2422at 78.008 kb on - strand, within GFF2422at 78.008 kb on - strand, within GFF2422at 78.083 kb on - strand, within GFF2422at 78.091 kb on + strand, within GFF2422at 78.118 kb on + strand, within GFF2422at 78.118 kb on + strand, within GFF2422at 78.118 kb on + strand, within GFF2422at 78.118 kb on + strand, within GFF2422at 78.119 kb on - strand, within GFF2422at 78.119 kb on - strand, within GFF2422at 78.152 kb on - strand, within GFF2422at 78.176 kb on + strand, within GFF2422at 78.185 kb on - strand, within GFF2422at 78.208 kb on + strand, within GFF2422at 78.211 kb on + strand, within GFF2422at 78.211 kb on + strand, within GFF2422at 78.295 kb on + strand, within GFF2422at 78.296 kb on - strand, within GFF2422at 78.296 kb on - strand, within GFF2422at 78.296 kb on - strand, within GFF2422at 78.326 kb on + strand, within GFF2422at 78.350 kb on + strand, within GFF2422at 78.350 kb on + strand, within GFF2422at 78.364 kb on + strand, within GFF2422at 78.394 kb on + strand, within GFF2422at 78.394 kb on + strand, within GFF2422at 78.395 kb on - strand, within GFF2422at 78.430 kb on + strand, within GFF2422at 78.430 kb on + strand, within GFF2422at 78.460 kb on + strand, within GFF2422at 78.559 kb on + strand, within GFF2422at 78.610 kb on + strand, within GFF2422at 78.610 kb on + strand, within GFF2422at 78.611 kb on - strand, within GFF2422at 78.611 kb on - strand, within GFF2422at 78.611 kb on - strand, within GFF2422at 78.631 kb on + strand, within GFF2422at 78.631 kb on + strand, within GFF2422at 78.632 kb on - strand, within GFF2422at 78.632 kb on - strand, within GFF2422at 78.685 kb on + strand, within GFF2422at 78.685 kb on + strand, within GFF2422at 78.740 kb on - strand, within GFF2422at 78.740 kb on - strand, within GFF2422at 78.740 kb on - strand, within GFF2422at 78.753 kb on + strand, within GFF2422at 78.753 kb on + strand, within GFF2422at 78.829 kb on + strand, within GFF2422at 78.854 kb on + strand, within GFF2422at 78.875 kb on + strand, within GFF2422at 78.892 kb on + strand, within GFF2422at 78.892 kb on + strand, within GFF2422at 78.893 kb on - strand, within GFF2422at 78.893 kb on - strand, within GFF2422at 78.913 kb on + strand, within GFF2422at 78.958 kb on + strand, within GFF2422at 78.958 kb on + strand, within GFF2422at 79.021 kb on + strand, within GFF2422at 79.021 kb on + strand, within GFF2422at 79.021 kb on + strand, within GFF2422at 79.022 kb on - strand, within GFF2422at 79.022 kb on - strand, within GFF2422at 79.022 kb on - strand, within GFF2422at 79.022 kb on - strand, within GFF2422at 79.114 kb on + strand, within GFF2422at 79.163 kb on - strand, within GFF2422at 79.163 kb on - strand, within GFF2422at 79.163 kb on - strand, within GFF2422at 79.163 kb on - strand, within GFF2422at 79.183 kb on + strand, within GFF2422at 79.183 kb on + strand, within GFF2422at 79.183 kb on + strand, within GFF2422at 79.183 kb on + strand, within GFF2422at 79.183 kb on + strand, within GFF2422at 79.184 kb on - strand, within GFF2422at 79.184 kb on - strand, within GFF2422at 79.217 kb on - strand, within GFF2422at 79.217 kb on - strand, within GFF2422at 79.255 kb on + strand, within GFF2422at 79.255 kb on + strand, within GFF2422at 79.256 kb on - strand, within GFF2422at 79.256 kb on - strand, within GFF2422at 79.256 kb on - strand, within GFF2422at 79.285 kb on + strand, within GFF2422at 79.312 kb on + strand, within GFF2422at 79.312 kb on + strand, within GFF2422at 79.312 kb on + strand, within GFF2422at 79.312 kb on + strand, within GFF2422at 79.312 kb on + strand, within GFF2422at 79.313 kb on - strand, within GFF2422at 79.313 kb on - strand, within GFF2422at 79.313 kb on - strand, within GFF2422at 79.457 kb on + strand, within GFF2422at 79.458 kb on - strand, within GFF2422at 79.537 kb on - strand, within GFF2422at 79.612 kb on + strand, within GFF2422at 79.612 kb on + strand, within GFF2422at 79.613 kb on - strand, within GFF2422at 79.786 kb on - strandat 80.091 kb on + strandat 80.091 kb on + strandat 80.242 kb on - strand, within GFF2423at 80.278 kb on + strand, within GFF2423at 80.279 kb on - strand, within GFF2423at 80.279 kb on - strand, within GFF2423at 80.535 kb on - strand, within GFF2423

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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76,438 + GFF2420 0.75 -1.2
76,438 + GFF2420 0.75 +1.8
76,438 + GFF2420 0.75 +1.0
76,438 + GFF2420 0.75 +1.1
76,438 + GFF2420 0.75 +0.0
76,439 - GFF2420 0.75 +0.0
76,439 - GFF2420 0.75 +0.0
76,439 - GFF2420 0.75 -0.7
76,468 + GFF2420 0.78 -0.7
76,469 - GFF2420 0.78 +0.2
76,469 - GFF2420 0.78 -1.8
76,469 - GFF2420 0.78 -0.1
76,469 - GFF2420 0.78 -0.4
76,469 - GFF2420 0.78 +1.4
76,469 - GFF2420 0.78 +0.3
76,615 + GFF2420 0.88 -0.5
76,616 - GFF2420 0.88 +0.4
76,633 + GFF2420 0.89 +1.3
76,633 + GFF2420 0.89 -0.1
76,633 + GFF2420 0.89 -0.2
76,633 + GFF2420 0.89 -1.3
76,634 - GFF2420 0.89 +1.4
76,634 - GFF2420 0.89 +0.2
76,634 - GFF2420 0.89 +0.2
76,634 - GFF2420 0.89 +0.4
76,648 + -0.3
76,649 - -1.6
76,649 - +0.3
76,651 + +0.5
76,651 + -0.5
76,652 - +0.8
76,699 + -0.6
76,699 + +0.5
76,699 + -0.8
76,699 + +0.5
76,700 - -0.0
76,700 - -0.3
76,700 - -0.0
76,700 - +1.6
76,700 - -0.5
76,720 + -1.2
76,721 - -0.6
76,721 - -2.8
76,882 - -0.4
76,889 - +0.3
76,993 + +0.4
77,190 + GFF2421 0.57 +0.7
77,190 + GFF2421 0.57 +0.1
77,191 - GFF2421 0.57 -1.1
77,228 + GFF2421 0.78 -0.7
77,228 + GFF2421 0.78 -0.2
77,228 + GFF2421 0.78 -0.1
77,229 - GFF2421 0.78 +0.5
77,229 - GFF2421 0.78 +0.0
77,266 + -1.6
77,266 + +1.3
77,266 + -0.6
77,267 - -0.6
77,267 - +0.9
77,323 + -1.1
77,346 + +0.1
77,356 - -0.4
77,398 + -0.5
77,399 - +0.2
77,399 - +1.0
77,413 + -0.9
77,434 + -0.0
77,434 + +1.6
77,435 - -0.3
77,435 - -0.0
77,435 - -1.4
77,453 - +0.1
77,468 - +0.2
77,471 - +1.4
77,484 + -0.2
77,484 + -0.6
77,484 + +0.5
77,485 - -0.6
77,486 + +0.1
77,487 - +0.7
77,521 - +1.3
77,521 - -0.1
77,573 + -0.2
77,575 + -1.5
77,575 + +1.9
77,576 - +0.0
77,638 + GFF2422 0.10 -1.1
77,639 - GFF2422 0.10 +0.4
77,692 + GFF2422 0.12 -0.0
77,692 + GFF2422 0.12 +0.3
77,692 + GFF2422 0.12 -0.6
77,693 - GFF2422 0.12 +0.7
77,693 - GFF2422 0.12 +0.1
77,693 - GFF2422 0.12 +0.1
77,695 + GFF2422 0.12 -1.0
77,695 + GFF2422 0.12 -0.0
77,696 - GFF2422 0.12 -0.7
77,696 - GFF2422 0.12 -0.1
77,696 - GFF2422 0.12 -0.9
77,696 - GFF2422 0.12 +0.1
77,800 + GFF2422 0.17 -0.7
77,801 - GFF2422 0.17 -0.4
77,801 - GFF2422 0.17 -1.0
77,801 - GFF2422 0.17 +0.2
77,801 - GFF2422 0.17 +1.4
77,806 + GFF2422 0.17 +1.6
77,806 + GFF2422 0.17 -1.0
77,807 - GFF2422 0.17 +0.5
77,807 - GFF2422 0.17 +0.5
77,807 - GFF2422 0.17 +0.7
77,807 - GFF2422 0.17 -0.7
77,807 - GFF2422 0.17 -0.0
77,807 - GFF2422 0.17 -0.1
77,807 - GFF2422 0.17 +1.3
77,816 + GFF2422 0.17 +0.1
77,816 + GFF2422 0.17 +0.7
77,817 - GFF2422 0.17 +0.6
77,819 + GFF2422 0.17 -0.4
77,820 - GFF2422 0.17 -0.0
77,896 + GFF2422 0.20 +1.3
77,897 - GFF2422 0.20 -0.5
77,897 - GFF2422 0.20 +1.8
77,989 + GFF2422 0.24 +0.2
77,989 + GFF2422 0.24 +0.5
77,990 - GFF2422 0.24 -0.9
77,990 - GFF2422 0.24 -0.8
77,990 - GFF2422 0.24 +0.4
77,990 - GFF2422 0.24 +0.5
78,007 + GFF2422 0.25 -1.5
78,007 + GFF2422 0.25 +0.4
78,008 - GFF2422 0.25 -0.6
78,008 - GFF2422 0.25 +0.2
78,083 - GFF2422 0.28 -2.4
78,091 + GFF2422 0.28 +0.5
78,118 + GFF2422 0.29 -0.5
78,118 + GFF2422 0.29 -1.3
78,118 + GFF2422 0.29 -0.5
78,118 + GFF2422 0.29 +0.6
78,119 - GFF2422 0.29 -0.8
78,119 - GFF2422 0.29 +1.1
78,152 - GFF2422 0.31 -0.7
78,176 + GFF2422 0.32 +0.6
78,185 - GFF2422 0.32 -1.1
78,208 + GFF2422 0.33 +0.2
78,211 + GFF2422 0.33 +0.3
78,211 + GFF2422 0.33 +0.2
78,295 + GFF2422 0.36 +0.5
78,296 - GFF2422 0.36 +0.8
78,296 - GFF2422 0.36 -0.9
78,296 - GFF2422 0.36 -0.7
78,326 + GFF2422 0.38 +1.0
78,350 + GFF2422 0.39 +1.0
78,350 + GFF2422 0.39 +0.1
78,364 + GFF2422 0.39 +0.6
78,394 + GFF2422 0.40 -0.1
78,394 + GFF2422 0.40 -2.1
78,395 - GFF2422 0.40 +0.3
78,430 + GFF2422 0.42 -0.0
78,430 + GFF2422 0.42 -0.3
78,460 + GFF2422 0.43 -0.0
78,559 + GFF2422 0.47 +1.9
78,610 + GFF2422 0.49 +0.4
78,610 + GFF2422 0.49 +1.5
78,611 - GFF2422 0.49 -1.1
78,611 - GFF2422 0.49 +0.4
78,611 - GFF2422 0.49 +0.3
78,631 + GFF2422 0.50 +0.4
78,631 + GFF2422 0.50 -0.1
78,632 - GFF2422 0.50 +0.7
78,632 - GFF2422 0.50 -0.0
78,685 + GFF2422 0.52 -0.8
78,685 + GFF2422 0.52 +0.9
78,740 - GFF2422 0.54 -0.1
78,740 - GFF2422 0.54 -1.6
78,740 - GFF2422 0.54 -0.8
78,753 + GFF2422 0.55 +0.2
78,753 + GFF2422 0.55 -0.5
78,829 + GFF2422 0.58 +0.3
78,854 + GFF2422 0.59 +0.4
78,875 + GFF2422 0.60 +0.7
78,892 + GFF2422 0.60 +0.5
78,892 + GFF2422 0.60 +0.8
78,893 - GFF2422 0.60 -0.5
78,893 - GFF2422 0.60 -0.2
78,913 + GFF2422 0.61 +0.2
78,958 + GFF2422 0.63 +0.7
78,958 + GFF2422 0.63 -1.3
79,021 + GFF2422 0.65 -0.2
79,021 + GFF2422 0.65 +0.5
79,021 + GFF2422 0.65 +0.3
79,022 - GFF2422 0.65 +1.0
79,022 - GFF2422 0.65 -1.1
79,022 - GFF2422 0.65 -0.2
79,022 - GFF2422 0.65 -0.3
79,114 + GFF2422 0.69 +0.1
79,163 - GFF2422 0.71 +0.7
79,163 - GFF2422 0.71 +0.7
79,163 - GFF2422 0.71 +0.1
79,163 - GFF2422 0.71 +0.4
79,183 + GFF2422 0.72 -2.6
79,183 + GFF2422 0.72 -0.9
79,183 + GFF2422 0.72 -1.8
79,183 + GFF2422 0.72 +0.3
79,183 + GFF2422 0.72 +0.1
79,184 - GFF2422 0.72 -1.7
79,184 - GFF2422 0.72 +1.3
79,217 - GFF2422 0.73 -1.1
79,217 - GFF2422 0.73 +1.1
79,255 + GFF2422 0.75 -2.3
79,255 + GFF2422 0.75 -0.0
79,256 - GFF2422 0.75 +0.6
79,256 - GFF2422 0.75 -1.6
79,256 - GFF2422 0.75 -0.3
79,285 + GFF2422 0.76 +1.1
79,312 + GFF2422 0.77 -0.7
79,312 + GFF2422 0.77 -0.4
79,312 + GFF2422 0.77 -0.5
79,312 + GFF2422 0.77 -0.7
79,312 + GFF2422 0.77 -0.0
79,313 - GFF2422 0.77 +0.8
79,313 - GFF2422 0.77 +0.5
79,313 - GFF2422 0.77 +0.2
79,457 + GFF2422 0.83 -0.1
79,458 - GFF2422 0.83 -0.6
79,537 - GFF2422 0.86 +0.1
79,612 + GFF2422 0.89 -0.4
79,612 + GFF2422 0.89 -0.2
79,613 - GFF2422 0.89 +1.0
79,786 - +0.1
80,091 + +0.9
80,091 + +0.3
80,242 - GFF2423 0.26 +1.3
80,278 + GFF2423 0.29 -1.0
80,279 - GFF2423 0.29 -0.6
80,279 - GFF2423 0.29 +0.7
80,535 - GFF2423 0.56 +0.9

Or see this region's nucleotide sequence