Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2409 and GFF2410 are separated by 6 nucleotides GFF2410 and GFF2411 are separated by 36 nucleotides GFF2411 and GFF2412 are separated by 60 nucleotides
GFF2409 - Regulatory protein LuxO, at 66,128 to 67,513
GFF2409
GFF2410 - ATP-dependent protease ATPase subunit HslU, at 67,520 to 68,827
GFF2410
GFF2411 - ATP-dependent protease subunit HslV, at 68,864 to 69,409
GFF2411
GFF2412 - Putative non-heme bromoperoxidase BpoC, at 69,470 to 70,261
GFF2412
Position (kb) 67
68
69 Strain fitness (log2 ratio) -2
-1
0
1 at 66.603 kb on - strand, within GFF2409 at 67.014 kb on - strand, within GFF2409 at 67.581 kb on + strand at 67.581 kb on + strand at 67.581 kb on + strand at 67.582 kb on - strand at 67.685 kb on - strand, within GFF2410 at 67.948 kb on + strand, within GFF2410 at 67.948 kb on + strand, within GFF2410 at 67.948 kb on + strand, within GFF2410 at 68.079 kb on - strand, within GFF2410 at 68.556 kb on + strand, within GFF2410 at 68.557 kb on - strand, within GFF2410 at 68.557 kb on - strand, within GFF2410 at 68.780 kb on - strand at 68.780 kb on - strand at 69.000 kb on + strand, within GFF2411 at 69.000 kb on + strand, within GFF2411 at 69.000 kb on + strand, within GFF2411 at 69.000 kb on + strand, within GFF2411 at 69.000 kb on + strand, within GFF2411 at 69.001 kb on - strand, within GFF2411 at 69.001 kb on - strand, within GFF2411 at 69.001 kb on - strand, within GFF2411 at 69.001 kb on - strand, within GFF2411 at 69.001 kb on - strand, within GFF2411 at 69.123 kb on + strand, within GFF2411 at 69.395 kb on - strand at 69.430 kb on + strand at 69.430 kb on + strand at 69.430 kb on + strand at 69.430 kb on + strand at 69.431 kb on - strand at 69.431 kb on - strand at 69.431 kb on - strand at 69.434 kb on + strand at 69.434 kb on + strand at 69.434 kb on + strand at 69.435 kb on - strand at 69.634 kb on - strand, within GFF2412 at 69.634 kb on - strand, within GFF2412
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 66,603 - GFF2409 0.34 +0.3 67,014 - GFF2409 0.64 -0.3 67,581 + +0.9 67,581 + -1.6 67,581 + +0.8 67,582 - -0.1 67,685 - GFF2410 0.13 +0.5 67,948 + GFF2410 0.33 -2.6 67,948 + GFF2410 0.33 +0.5 67,948 + GFF2410 0.33 +0.7 68,079 - GFF2410 0.43 +0.4 68,556 + GFF2410 0.79 +1.0 68,557 - GFF2410 0.79 -0.5 68,557 - GFF2410 0.79 +1.0 68,780 - -0.0 68,780 - -0.1 69,000 + GFF2411 0.25 -1.3 69,000 + GFF2411 0.25 +0.4 69,000 + GFF2411 0.25 +0.1 69,000 + GFF2411 0.25 -0.6 69,000 + GFF2411 0.25 +0.5 69,001 - GFF2411 0.25 +0.2 69,001 - GFF2411 0.25 -0.4 69,001 - GFF2411 0.25 +0.1 69,001 - GFF2411 0.25 -0.3 69,001 - GFF2411 0.25 +0.7 69,123 + GFF2411 0.47 -2.3 69,395 - +0.7 69,430 + +0.1 69,430 + -0.2 69,430 + -0.4 69,430 + +0.9 69,431 - -0.3 69,431 - -0.7 69,431 - -0.5 69,434 + -0.8 69,434 + -0.8 69,434 + -0.5 69,435 - +0.2 69,634 - GFF2412 0.21 -0.6 69,634 - GFF2412 0.21 -0.3
Or see this region's nucleotide sequence