Strain Fitness in Xanthobacter sp. DMC5 around GFF2366

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2365 and GFF2366 are separated by 125 nucleotidesGFF2366 and GFF2367 overlap by 26 nucleotidesGFF2367 and GFF2368 are separated by 46 nucleotides GFF2365 - Octaprenyl diphosphate synthase, at 17,337 to 18,344 GFF2365 GFF2366 - hypothetical protein, at 18,470 to 18,697 GFF2366 GFF2367 - tRNA1(Val) (adenine(37)-N6)-methyltransferase, at 18,672 to 19,445 GFF2367 GFF2368 - hypothetical protein, at 19,492 to 20,385 GFF2368 Position (kb) 18 19Strain fitness (log2 ratio) -1 0 1at 18.382 kb on - strandat 18.466 kb on + strandat 18.466 kb on + strandat 18.467 kb on - strandat 18.543 kb on + strand, within GFF2366at 18.543 kb on + strand, within GFF2366at 19.504 kb on + strandat 19.504 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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18,382 - -0.2
18,466 + -0.7
18,466 + +0.6
18,467 - -1.1
18,543 + GFF2366 0.32 -0.9
18,543 + GFF2366 0.32 -0.3
19,504 + +0.1
19,504 + -0.1

Or see this region's nucleotide sequence