Strain Fitness in Xanthobacter sp. DMC5 around GFF2264

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2263 and GFF2264 are separated by 232 nucleotidesGFF2264 and GFF2265 are separated by 445 nucleotidesGFF2265 and GFF2266 are separated by 167 nucleotides GFF2263 - Efflux pump periplasmic linker BepF, at 969,604 to 970,869 GFF2263 GFF2264 - multidrug efflux RND transporter permease subunit OqxB12, at 971,102 to 974,311 GFF2264 GFF2265 - hypothetical protein, at 974,757 to 975,071 GFF2265 GFF2266 - 3-oxo-tetronate kinase, at 975,239 to 976,528 GFF2266 Position (kb) 971 972 973 974 975Strain fitness (log2 ratio) -2 -1 0 1 2at 970.178 kb on + strand, within GFF2263at 970.333 kb on + strand, within GFF2263at 970.334 kb on - strand, within GFF2263at 970.538 kb on - strand, within GFF2263at 970.872 kb on + strandat 970.872 kb on + strandat 970.873 kb on - strandat 970.873 kb on - strandat 970.873 kb on - strandat 970.967 kb on - strandat 971.253 kb on - strandat 971.336 kb on + strandat 971.336 kb on + strandat 971.336 kb on + strandat 971.336 kb on + strandat 971.336 kb on + strandat 971.336 kb on + strandat 971.336 kb on + strandat 971.336 kb on + strandat 971.336 kb on + strandat 971.337 kb on - strandat 971.337 kb on - strandat 971.337 kb on - strandat 971.576 kb on + strand, within GFF2264at 971.576 kb on + strand, within GFF2264at 971.654 kb on + strand, within GFF2264at 971.933 kb on + strand, within GFF2264at 971.933 kb on + strand, within GFF2264at 971.933 kb on + strand, within GFF2264at 972.078 kb on - strand, within GFF2264at 972.078 kb on - strand, within GFF2264at 972.089 kb on + strand, within GFF2264at 972.089 kb on + strand, within GFF2264at 972.090 kb on - strand, within GFF2264at 972.090 kb on - strand, within GFF2264at 972.260 kb on + strand, within GFF2264at 972.260 kb on + strand, within GFF2264at 972.260 kb on + strand, within GFF2264at 972.261 kb on - strand, within GFF2264at 972.261 kb on - strand, within GFF2264at 972.261 kb on - strand, within GFF2264at 972.261 kb on - strand, within GFF2264at 972.261 kb on - strand, within GFF2264at 972.281 kb on - strand, within GFF2264at 972.401 kb on + strand, within GFF2264at 972.401 kb on + strand, within GFF2264at 972.401 kb on + strand, within GFF2264at 972.402 kb on - strand, within GFF2264at 972.402 kb on - strand, within GFF2264at 972.402 kb on - strand, within GFF2264at 972.402 kb on - strand, within GFF2264at 972.506 kb on + strand, within GFF2264at 972.506 kb on + strand, within GFF2264at 972.507 kb on - strand, within GFF2264at 972.758 kb on + strand, within GFF2264at 972.758 kb on + strand, within GFF2264at 972.758 kb on + strand, within GFF2264at 972.758 kb on + strand, within GFF2264at 972.759 kb on - strand, within GFF2264at 972.759 kb on - strand, within GFF2264at 972.836 kb on + strand, within GFF2264at 972.836 kb on + strand, within GFF2264at 972.837 kb on - strand, within GFF2264at 972.837 kb on - strand, within GFF2264at 972.837 kb on - strand, within GFF2264at 972.837 kb on - strand, within GFF2264at 972.837 kb on - strand, within GFF2264at 972.837 kb on - strand, within GFF2264at 972.837 kb on - strand, within GFF2264at 973.199 kb on + strand, within GFF2264at 973.280 kb on + strand, within GFF2264at 973.280 kb on + strand, within GFF2264at 973.281 kb on - strand, within GFF2264at 973.281 kb on - strand, within GFF2264at 973.281 kb on - strand, within GFF2264at 973.287 kb on + strand, within GFF2264at 973.288 kb on - strand, within GFF2264at 973.379 kb on + strand, within GFF2264at 973.380 kb on - strand, within GFF2264at 973.380 kb on - strand, within GFF2264at 973.427 kb on + strand, within GFF2264at 973.427 kb on + strand, within GFF2264at 973.427 kb on + strand, within GFF2264at 973.428 kb on - strand, within GFF2264at 973.428 kb on - strand, within GFF2264at 973.428 kb on - strand, within GFF2264at 973.428 kb on - strand, within GFF2264at 973.577 kb on + strand, within GFF2264at 973.715 kb on + strand, within GFF2264at 973.716 kb on - strand, within GFF2264at 973.716 kb on - strand, within GFF2264at 973.800 kb on - strand, within GFF2264at 973.800 kb on - strand, within GFF2264at 974.079 kb on + strandat 974.080 kb on - strandat 974.198 kb on + strandat 974.198 kb on + strandat 974.198 kb on + strandat 974.199 kb on - strandat 974.199 kb on - strandat 974.310 kb on - strandat 974.310 kb on - strandat 974.422 kb on - strandat 974.490 kb on + strandat 974.491 kb on - strandat 974.532 kb on - strandat 974.564 kb on + strandat 974.678 kb on - strandat 974.897 kb on + strand, within GFF2265at 974.897 kb on + strand, within GFF2265at 974.898 kb on - strand, within GFF2265at 974.898 kb on - strand, within GFF2265at 975.117 kb on + strandat 975.118 kb on - strandat 975.118 kb on - strandat 975.118 kb on - strandat 975.223 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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970,178 + GFF2263 0.45 -1.3
970,333 + GFF2263 0.58 -0.4
970,334 - GFF2263 0.58 +2.1
970,538 - GFF2263 0.74 -0.2
970,872 + -0.0
970,872 + +1.0
970,873 - -1.2
970,873 - -0.4
970,873 - +2.0
970,967 - +0.9
971,253 - +0.2
971,336 + -0.6
971,336 + +1.4
971,336 + +0.6
971,336 + +0.1
971,336 + -0.9
971,336 + -1.0
971,336 + +1.4
971,336 + -0.0
971,336 + +1.2
971,337 - +0.7
971,337 - -1.2
971,337 - -0.0
971,576 + GFF2264 0.15 +0.2
971,576 + GFF2264 0.15 +0.2
971,654 + GFF2264 0.17 +0.4
971,933 + GFF2264 0.26 +0.4
971,933 + GFF2264 0.26 -0.8
971,933 + GFF2264 0.26 -1.7
972,078 - GFF2264 0.30 +0.1
972,078 - GFF2264 0.30 -0.7
972,089 + GFF2264 0.31 -0.5
972,089 + GFF2264 0.31 +0.4
972,090 - GFF2264 0.31 +0.3
972,090 - GFF2264 0.31 -1.6
972,260 + GFF2264 0.36 +1.2
972,260 + GFF2264 0.36 -0.2
972,260 + GFF2264 0.36 +0.5
972,261 - GFF2264 0.36 -0.3
972,261 - GFF2264 0.36 +0.2
972,261 - GFF2264 0.36 -1.2
972,261 - GFF2264 0.36 -0.0
972,261 - GFF2264 0.36 +0.8
972,281 - GFF2264 0.37 +1.4
972,401 + GFF2264 0.40 +0.8
972,401 + GFF2264 0.40 +0.1
972,401 + GFF2264 0.40 -0.9
972,402 - GFF2264 0.40 -0.9
972,402 - GFF2264 0.40 +0.2
972,402 - GFF2264 0.40 -0.1
972,402 - GFF2264 0.40 -0.9
972,506 + GFF2264 0.44 +1.2
972,506 + GFF2264 0.44 +0.1
972,507 - GFF2264 0.44 -0.4
972,758 + GFF2264 0.52 -1.4
972,758 + GFF2264 0.52 -0.4
972,758 + GFF2264 0.52 -0.3
972,758 + GFF2264 0.52 +0.7
972,759 - GFF2264 0.52 +0.3
972,759 - GFF2264 0.52 +0.1
972,836 + GFF2264 0.54 +1.4
972,836 + GFF2264 0.54 +0.4
972,837 - GFF2264 0.54 -0.2
972,837 - GFF2264 0.54 -0.1
972,837 - GFF2264 0.54 -0.1
972,837 - GFF2264 0.54 -0.3
972,837 - GFF2264 0.54 +2.4
972,837 - GFF2264 0.54 -0.8
972,837 - GFF2264 0.54 +0.3
973,199 + GFF2264 0.65 +0.2
973,280 + GFF2264 0.68 -0.1
973,280 + GFF2264 0.68 -0.0
973,281 - GFF2264 0.68 -0.0
973,281 - GFF2264 0.68 -1.1
973,281 - GFF2264 0.68 +1.2
973,287 + GFF2264 0.68 +0.4
973,288 - GFF2264 0.68 -0.5
973,379 + GFF2264 0.71 +0.9
973,380 - GFF2264 0.71 -0.2
973,380 - GFF2264 0.71 -0.2
973,427 + GFF2264 0.72 +0.7
973,427 + GFF2264 0.72 +0.6
973,427 + GFF2264 0.72 +0.4
973,428 - GFF2264 0.72 +0.8
973,428 - GFF2264 0.72 +0.6
973,428 - GFF2264 0.72 +0.6
973,428 - GFF2264 0.72 +1.4
973,577 + GFF2264 0.77 +0.5
973,715 + GFF2264 0.81 -0.3
973,716 - GFF2264 0.81 +0.1
973,716 - GFF2264 0.81 -0.1
973,800 - GFF2264 0.84 +0.9
973,800 - GFF2264 0.84 -0.6
974,079 + +1.8
974,080 - -0.0
974,198 + +0.3
974,198 + +0.6
974,198 + -0.5
974,199 - -0.8
974,199 - +0.3
974,310 - -0.6
974,310 - +1.5
974,422 - -0.0
974,490 + +0.7
974,491 - -2.2
974,532 - +0.1
974,564 + -0.2
974,678 - +0.6
974,897 + GFF2265 0.44 +0.9
974,897 + GFF2265 0.44 +0.4
974,898 - GFF2265 0.45 +1.4
974,898 - GFF2265 0.45 -0.4
975,117 + -0.0
975,118 - +0.4
975,118 - -0.6
975,118 - -1.0
975,223 + +0.6

Or see this region's nucleotide sequence