Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2240 and GFF2241 overlap by 4 nucleotides GFF2241 and GFF2242 are separated by 6 nucleotides
GFF2240 - Periplasmic [NiFeSe] hydrogenase small subunit, at 943,558 to 944,568
GFF2240
GFF2241 - Periplasmic [NiFeSe] hydrogenase large subunit, at 944,565 to 946,022
GFF2241
GFF2242 - Carbamoyltransferase HypF, at 946,029 to 948,338
GFF2242
Position (kb) 944
945
946
947 Strain fitness (log2 ratio) -1
0
1
2 at 943.796 kb on + strand, within GFF2240 at 943.827 kb on + strand, within GFF2240 at 943.827 kb on + strand, within GFF2240 at 943.827 kb on + strand, within GFF2240 at 943.921 kb on + strand, within GFF2240 at 943.975 kb on + strand, within GFF2240 at 943.976 kb on - strand, within GFF2240 at 944.137 kb on + strand, within GFF2240 at 944.155 kb on + strand, within GFF2240 at 944.156 kb on - strand, within GFF2240 at 944.200 kb on + strand, within GFF2240 at 944.206 kb on + strand, within GFF2240 at 944.207 kb on - strand, within GFF2240 at 944.934 kb on + strand, within GFF2241 at 944.935 kb on - strand, within GFF2241 at 945.369 kb on + strand, within GFF2241 at 945.370 kb on - strand, within GFF2241 at 945.522 kb on + strand, within GFF2241 at 946.097 kb on - strand at 946.130 kb on - strand at 946.476 kb on + strand, within GFF2242 at 946.962 kb on + strand, within GFF2242 at 946.964 kb on + strand, within GFF2242 at 946.964 kb on + strand, within GFF2242 at 946.964 kb on + strand, within GFF2242 at 946.965 kb on - strand, within GFF2242
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 943,796 + GFF2240 0.24 +0.1 943,827 + GFF2240 0.27 +0.4 943,827 + GFF2240 0.27 +0.5 943,827 + GFF2240 0.27 -0.4 943,921 + GFF2240 0.36 -0.8 943,975 + GFF2240 0.41 -0.8 943,976 - GFF2240 0.41 -0.2 944,137 + GFF2240 0.57 +0.9 944,155 + GFF2240 0.59 +2.0 944,156 - GFF2240 0.59 +0.8 944,200 + GFF2240 0.64 +0.2 944,206 + GFF2240 0.64 +0.2 944,207 - GFF2240 0.64 -0.1 944,934 + GFF2241 0.25 +1.1 944,935 - GFF2241 0.25 -0.2 945,369 + GFF2241 0.55 -0.5 945,370 - GFF2241 0.55 -1.7 945,522 + GFF2241 0.66 -1.1 946,097 - -0.6 946,130 - +0.9 946,476 + GFF2242 0.19 -0.3 946,962 + GFF2242 0.40 +0.4 946,964 + GFF2242 0.40 -0.4 946,964 + GFF2242 0.40 +1.9 946,964 + GFF2242 0.40 +1.1 946,965 - GFF2242 0.41 -0.8
Or see this region's nucleotide sequence