Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF20 and GFF21 are separated by 82 nucleotides GFF21 and GFF22 are separated by 289 nucleotides GFF22 and GFF23 are separated by 259 nucleotides
GFF20 - hypothetical protein, at 25,425 to 25,838
GFF20
GFF21 - Regulator of nucleoside diphosphate kinase, at 25,921 to 26,337
GFF21
GFF22 - HTH-type transcriptional regulator HdfR, at 26,627 to 27,529
GFF22
GFF23 - Fosfomycin resistance protein AbaF, at 27,789 to 29,195
GFF23
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2 at 26.186 kb on - strand, within GFF21 at 26.215 kb on + strand, within GFF21 at 26.215 kb on + strand, within GFF21 at 26.216 kb on - strand, within GFF21 at 26.216 kb on - strand, within GFF21 at 26.425 kb on + strand at 26.579 kb on + strand at 26.584 kb on + strand at 26.584 kb on + strand at 26.584 kb on + strand at 26.724 kb on + strand, within GFF22 at 26.935 kb on - strand, within GFF22 at 26.935 kb on - strand, within GFF22 at 27.184 kb on - strand, within GFF22 at 27.255 kb on - strand, within GFF22 at 27.255 kb on - strand, within GFF22 at 27.255 kb on - strand, within GFF22 at 27.330 kb on + strand, within GFF22 at 27.330 kb on + strand, within GFF22 at 27.331 kb on - strand, within GFF22 at 27.513 kb on - strand at 27.513 kb on - strand at 27.513 kb on - strand at 27.513 kb on - strand at 27.610 kb on + strand at 27.906 kb on + strand at 27.907 kb on - strand at 27.907 kb on - strand at 27.942 kb on + strand, within GFF23 at 27.963 kb on + strand, within GFF23 at 28.134 kb on + strand, within GFF23 at 28.135 kb on - strand, within GFF23 at 28.136 kb on + strand, within GFF23 at 28.176 kb on + strand, within GFF23 at 28.428 kb on + strand, within GFF23 at 28.428 kb on + strand, within GFF23 at 28.429 kb on - strand, within GFF23 at 28.429 kb on - strand, within GFF23 at 28.429 kb on - strand, within GFF23
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 26,186 - GFF21 0.64 -0.2 26,215 + GFF21 0.71 -0.4 26,215 + GFF21 0.71 +1.3 26,216 - GFF21 0.71 +2.5 26,216 - GFF21 0.71 -1.9 26,425 + -0.8 26,579 + +0.7 26,584 + +0.4 26,584 + -0.7 26,584 + +0.3 26,724 + GFF22 0.11 -0.3 26,935 - GFF22 0.34 -0.1 26,935 - GFF22 0.34 -0.6 27,184 - GFF22 0.62 +0.5 27,255 - GFF22 0.70 -1.6 27,255 - GFF22 0.70 +0.2 27,255 - GFF22 0.70 +0.1 27,330 + GFF22 0.78 +0.3 27,330 + GFF22 0.78 -0.6 27,331 - GFF22 0.78 +0.6 27,513 - +0.2 27,513 - -0.8 27,513 - -0.5 27,513 - +0.2 27,610 + +0.8 27,906 + +0.4 27,907 - +0.3 27,907 - +0.0 27,942 + GFF23 0.11 -0.4 27,963 + GFF23 0.12 -1.2 28,134 + GFF23 0.25 -0.2 28,135 - GFF23 0.25 -0.1 28,136 + GFF23 0.25 +0.4 28,176 + GFF23 0.28 -0.4 28,428 + GFF23 0.45 -0.9 28,428 + GFF23 0.45 -0.4 28,429 - GFF23 0.45 +0.8 28,429 - GFF23 0.45 +0.3 28,429 - GFF23 0.45 +0.8
Or see this region's nucleotide sequence