Strain Fitness in Xanthobacter sp. DMC5 around GFF2197

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2196 and GFF2197 are separated by 578 nucleotidesGFF2197 and GFF2198 are separated by 189 nucleotides GFF2196 - hypothetical protein, at 894,389 to 894,682 GFF2196 GFF2197 - hypothetical protein, at 895,261 to 896,253 GFF2197 GFF2198 - hypothetical protein, at 896,443 to 897,930 GFF2198 Position (kb) 895 896 897Strain fitness (log2 ratio) -2 -1 0 1at 894.364 kb on - strandat 894.602 kb on - strand, within GFF2196at 894.736 kb on + strandat 894.736 kb on + strandat 894.737 kb on - strandat 894.737 kb on - strandat 894.788 kb on + strandat 894.788 kb on + strandat 894.816 kb on - strandat 894.816 kb on - strandat 894.895 kb on + strandat 894.933 kb on - strandat 894.998 kb on + strandat 894.999 kb on - strandat 895.032 kb on - strandat 895.035 kb on + strandat 895.035 kb on + strandat 895.035 kb on + strandat 895.035 kb on + strandat 895.035 kb on + strandat 895.036 kb on - strandat 895.036 kb on - strandat 895.036 kb on - strandat 895.036 kb on - strandat 895.185 kb on + strandat 895.186 kb on - strandat 895.274 kb on + strandat 895.274 kb on + strandat 895.274 kb on + strandat 895.275 kb on - strandat 895.275 kb on - strandat 895.326 kb on - strandat 895.400 kb on + strand, within GFF2197at 895.400 kb on + strand, within GFF2197at 895.400 kb on + strand, within GFF2197at 895.400 kb on + strand, within GFF2197at 895.401 kb on - strand, within GFF2197at 895.401 kb on - strand, within GFF2197at 895.401 kb on - strand, within GFF2197at 895.436 kb on + strand, within GFF2197at 895.436 kb on + strand, within GFF2197at 895.436 kb on + strand, within GFF2197at 895.436 kb on + strand, within GFF2197at 895.436 kb on + strand, within GFF2197at 895.436 kb on + strand, within GFF2197at 895.436 kb on + strand, within GFF2197at 895.436 kb on + strand, within GFF2197at 895.436 kb on + strand, within GFF2197at 895.436 kb on + strand, within GFF2197at 895.436 kb on + strand, within GFF2197at 895.436 kb on + strand, within GFF2197at 895.436 kb on + strand, within GFF2197at 895.436 kb on + strand, within GFF2197at 895.437 kb on - strand, within GFF2197at 895.437 kb on - strand, within GFF2197at 895.437 kb on - strand, within GFF2197at 895.437 kb on - strand, within GFF2197at 895.437 kb on - strand, within GFF2197at 895.437 kb on - strand, within GFF2197at 895.515 kb on - strand, within GFF2197at 895.617 kb on - strand, within GFF2197at 895.617 kb on - strand, within GFF2197at 895.917 kb on + strand, within GFF2197at 895.959 kb on - strand, within GFF2197at 895.985 kb on + strand, within GFF2197at 895.986 kb on - strand, within GFF2197at 895.986 kb on - strand, within GFF2197at 896.036 kb on + strand, within GFF2197at 896.207 kb on + strandat 896.208 kb on - strandat 896.208 kb on - strandat 896.208 kb on - strandat 896.288 kb on - strandat 896.288 kb on - strandat 896.524 kb on + strandat 896.524 kb on + strandat 896.524 kb on + strandat 896.525 kb on - strandat 896.525 kb on - strandat 896.533 kb on + strandat 896.533 kb on + strandat 896.587 kb on + strandat 896.587 kb on + strandat 896.588 kb on - strandat 896.609 kb on - strand, within GFF2198at 896.660 kb on - strand, within GFF2198at 896.896 kb on + strand, within GFF2198at 896.896 kb on + strand, within GFF2198at 896.897 kb on - strand, within GFF2198at 896.902 kb on + strand, within GFF2198at 896.902 kb on + strand, within GFF2198at 896.902 kb on + strand, within GFF2198at 896.903 kb on - strand, within GFF2198at 896.903 kb on - strand, within GFF2198at 896.903 kb on - strand, within GFF2198at 896.953 kb on + strand, within GFF2198at 896.953 kb on + strand, within GFF2198at 896.953 kb on + strand, within GFF2198at 897.019 kb on + strand, within GFF2198at 897.019 kb on + strand, within GFF2198at 897.020 kb on - strand, within GFF2198at 897.020 kb on - strand, within GFF2198at 897.020 kb on - strand, within GFF2198at 897.020 kb on - strand, within GFF2198at 897.201 kb on + strand, within GFF2198at 897.201 kb on + strand, within GFF2198at 897.202 kb on - strand, within GFF2198

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
894,364 - +0.7
894,602 - GFF2196 0.72 +1.6
894,736 + -0.3
894,736 + +1.6
894,737 - -0.1
894,737 - -0.5
894,788 + +0.1
894,788 + +0.2
894,816 - +0.2
894,816 - +0.2
894,895 + -0.5
894,933 - +0.4
894,998 + +0.1
894,999 - +0.6
895,032 - -1.8
895,035 + +0.5
895,035 + -0.2
895,035 + -0.9
895,035 + -0.6
895,035 + -0.4
895,036 - -0.2
895,036 - -1.9
895,036 - +0.0
895,036 - -1.1
895,185 + +0.4
895,186 - +1.1
895,274 + +1.2
895,274 + +0.1
895,274 + +0.8
895,275 - +1.4
895,275 - +0.2
895,326 - -0.0
895,400 + GFF2197 0.14 -0.6
895,400 + GFF2197 0.14 -0.7
895,400 + GFF2197 0.14 +0.8
895,400 + GFF2197 0.14 +1.1
895,401 - GFF2197 0.14 -0.1
895,401 - GFF2197 0.14 +0.8
895,401 - GFF2197 0.14 +1.2
895,436 + GFF2197 0.18 +0.1
895,436 + GFF2197 0.18 +0.2
895,436 + GFF2197 0.18 +0.2
895,436 + GFF2197 0.18 -0.4
895,436 + GFF2197 0.18 +0.7
895,436 + GFF2197 0.18 -0.1
895,436 + GFF2197 0.18 -1.9
895,436 + GFF2197 0.18 -0.3
895,436 + GFF2197 0.18 -0.1
895,436 + GFF2197 0.18 -1.4
895,436 + GFF2197 0.18 -0.5
895,436 + GFF2197 0.18 +0.2
895,436 + GFF2197 0.18 -0.8
895,436 + GFF2197 0.18 -0.3
895,437 - GFF2197 0.18 -0.4
895,437 - GFF2197 0.18 +0.3
895,437 - GFF2197 0.18 -0.2
895,437 - GFF2197 0.18 -0.4
895,437 - GFF2197 0.18 -0.5
895,437 - GFF2197 0.18 -0.8
895,515 - GFF2197 0.26 -1.1
895,617 - GFF2197 0.36 +0.2
895,617 - GFF2197 0.36 -0.2
895,917 + GFF2197 0.66 +0.1
895,959 - GFF2197 0.70 +0.1
895,985 + GFF2197 0.73 -0.8
895,986 - GFF2197 0.73 -1.1
895,986 - GFF2197 0.73 +0.4
896,036 + GFF2197 0.78 -0.2
896,207 + -1.3
896,208 - +0.6
896,208 - +0.3
896,208 - +0.4
896,288 - -0.3
896,288 - +1.1
896,524 + +0.0
896,524 + -0.6
896,524 + -0.6
896,525 - -0.2
896,525 - +1.3
896,533 + +0.9
896,533 + +0.3
896,587 + +1.7
896,587 + +0.2
896,588 - -1.0
896,609 - GFF2198 0.11 -0.2
896,660 - GFF2198 0.15 +0.1
896,896 + GFF2198 0.30 -1.1
896,896 + GFF2198 0.30 -1.8
896,897 - GFF2198 0.31 -0.1
896,902 + GFF2198 0.31 -0.9
896,902 + GFF2198 0.31 -0.6
896,902 + GFF2198 0.31 +0.3
896,903 - GFF2198 0.31 -0.1
896,903 - GFF2198 0.31 +0.7
896,903 - GFF2198 0.31 +1.1
896,953 + GFF2198 0.34 -1.0
896,953 + GFF2198 0.34 -0.4
896,953 + GFF2198 0.34 -0.2
897,019 + GFF2198 0.39 -0.8
897,019 + GFF2198 0.39 +0.9
897,020 - GFF2198 0.39 -0.7
897,020 - GFF2198 0.39 -0.2
897,020 - GFF2198 0.39 +0.5
897,020 - GFF2198 0.39 +1.4
897,201 + GFF2198 0.51 +0.4
897,201 + GFF2198 0.51 -0.0
897,202 - GFF2198 0.51 -1.0

Or see this region's nucleotide sequence