Strain Fitness in Xanthobacter sp. DMC5 around GFF2154

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2153 and GFF2154 are separated by 123 nucleotidesGFF2154 and GFF2155 are separated by 123 nucleotides GFF2153 - hypothetical protein, at 843,152 to 844,057 GFF2153 GFF2154 - Chaperone protein DnaK, at 844,181 to 845,431 GFF2154 GFF2155 - Homoserine O-acetyltransferase, at 845,555 to 848,089 GFF2155 Position (kb) 844 845 846Strain fitness (log2 ratio) -1 0 1 2at 843.369 kb on - strand, within GFF2153at 843.383 kb on + strand, within GFF2153at 843.384 kb on - strand, within GFF2153at 843.384 kb on - strand, within GFF2153at 843.384 kb on - strand, within GFF2153at 843.641 kb on + strand, within GFF2153at 843.915 kb on - strand, within GFF2153at 843.915 kb on - strand, within GFF2153at 843.963 kb on - strand, within GFF2153at 843.963 kb on - strand, within GFF2153at 844.008 kb on - strandat 844.136 kb on + strandat 844.136 kb on + strandat 844.136 kb on + strandat 844.137 kb on - strandat 844.141 kb on - strandat 844.163 kb on + strandat 844.279 kb on + strandat 844.298 kb on + strandat 844.349 kb on + strand, within GFF2154at 844.350 kb on - strand, within GFF2154at 844.350 kb on - strand, within GFF2154at 844.350 kb on - strand, within GFF2154at 844.717 kb on + strand, within GFF2154at 844.717 kb on + strand, within GFF2154at 844.928 kb on + strand, within GFF2154at 844.929 kb on - strand, within GFF2154at 844.967 kb on + strand, within GFF2154at 844.968 kb on - strand, within GFF2154at 844.968 kb on - strand, within GFF2154at 844.968 kb on - strand, within GFF2154at 844.968 kb on - strand, within GFF2154at 844.968 kb on - strand, within GFF2154at 845.232 kb on + strand, within GFF2154at 845.233 kb on - strand, within GFF2154at 845.562 kb on - strandat 845.624 kb on + strandat 845.625 kb on - strandat 845.727 kb on - strandat 845.759 kb on + strandat 845.759 kb on + strandat 845.760 kb on - strandat 845.760 kb on - strandat 845.760 kb on - strandat 845.849 kb on + strand, within GFF2155at 845.850 kb on - strand, within GFF2155at 845.850 kb on - strand, within GFF2155at 845.850 kb on - strand, within GFF2155at 845.945 kb on + strand, within GFF2155at 845.945 kb on + strand, within GFF2155at 845.945 kb on + strand, within GFF2155at 845.945 kb on + strand, within GFF2155at 845.945 kb on + strand, within GFF2155at 845.945 kb on + strand, within GFF2155at 845.946 kb on - strand, within GFF2155at 845.946 kb on - strand, within GFF2155at 845.946 kb on - strand, within GFF2155at 845.946 kb on - strand, within GFF2155at 845.946 kb on - strand, within GFF2155at 845.946 kb on - strand, within GFF2155at 845.946 kb on - strand, within GFF2155at 845.946 kb on - strand, within GFF2155at 846.023 kb on + strand, within GFF2155at 846.023 kb on + strand, within GFF2155at 846.024 kb on - strand, within GFF2155at 846.024 kb on - strand, within GFF2155at 846.024 kb on - strand, within GFF2155at 846.026 kb on + strand, within GFF2155at 846.027 kb on - strand, within GFF2155at 846.027 kb on - strand, within GFF2155at 846.104 kb on + strand, within GFF2155at 846.110 kb on + strand, within GFF2155at 846.110 kb on + strand, within GFF2155at 846.110 kb on + strand, within GFF2155at 846.110 kb on + strand, within GFF2155at 846.134 kb on + strand, within GFF2155at 846.134 kb on + strand, within GFF2155at 846.212 kb on + strand, within GFF2155at 846.212 kb on + strand, within GFF2155at 846.212 kb on + strand, within GFF2155at 846.212 kb on + strand, within GFF2155at 846.212 kb on + strand, within GFF2155at 846.212 kb on + strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.213 kb on - strand, within GFF2155at 846.374 kb on + strand, within GFF2155at 846.374 kb on + strand, within GFF2155at 846.375 kb on - strand, within GFF2155at 846.375 kb on - strand, within GFF2155at 846.375 kb on - strand, within GFF2155

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
843,369 - GFF2153 0.24 -1.2
843,383 + GFF2153 0.25 -0.4
843,384 - GFF2153 0.26 +0.6
843,384 - GFF2153 0.26 -0.4
843,384 - GFF2153 0.26 +0.1
843,641 + GFF2153 0.54 +1.0
843,915 - GFF2153 0.84 +1.1
843,915 - GFF2153 0.84 +0.5
843,963 - GFF2153 0.90 +0.6
843,963 - GFF2153 0.90 -0.4
844,008 - +0.1
844,136 + +0.7
844,136 + -0.3
844,136 + +1.4
844,137 - -1.1
844,141 - -0.6
844,163 + -1.1
844,279 + +0.7
844,298 + -1.0
844,349 + GFF2154 0.13 +0.2
844,350 - GFF2154 0.14 +0.3
844,350 - GFF2154 0.14 -1.2
844,350 - GFF2154 0.14 +0.9
844,717 + GFF2154 0.43 +0.8
844,717 + GFF2154 0.43 -0.7
844,928 + GFF2154 0.60 -0.7
844,929 - GFF2154 0.60 +0.1
844,967 + GFF2154 0.63 -0.2
844,968 - GFF2154 0.63 +0.4
844,968 - GFF2154 0.63 -1.0
844,968 - GFF2154 0.63 -0.4
844,968 - GFF2154 0.63 -0.0
844,968 - GFF2154 0.63 -0.2
845,232 + GFF2154 0.84 -0.3
845,233 - GFF2154 0.84 -0.3
845,562 - +0.1
845,624 + -1.1
845,625 - +0.1
845,727 - +0.8
845,759 + +1.6
845,759 + +0.3
845,760 - -0.3
845,760 - -0.8
845,760 - -1.2
845,849 + GFF2155 0.12 +1.4
845,850 - GFF2155 0.12 +0.6
845,850 - GFF2155 0.12 -0.8
845,850 - GFF2155 0.12 +0.2
845,945 + GFF2155 0.15 +1.0
845,945 + GFF2155 0.15 -0.4
845,945 + GFF2155 0.15 -0.3
845,945 + GFF2155 0.15 -0.4
845,945 + GFF2155 0.15 -0.0
845,945 + GFF2155 0.15 -0.4
845,946 - GFF2155 0.15 +0.6
845,946 - GFF2155 0.15 +0.3
845,946 - GFF2155 0.15 -0.3
845,946 - GFF2155 0.15 +0.1
845,946 - GFF2155 0.15 -0.8
845,946 - GFF2155 0.15 -0.6
845,946 - GFF2155 0.15 +0.3
845,946 - GFF2155 0.15 -0.2
846,023 + GFF2155 0.18 -1.3
846,023 + GFF2155 0.18 -0.9
846,024 - GFF2155 0.19 +0.4
846,024 - GFF2155 0.19 -0.4
846,024 - GFF2155 0.19 -0.4
846,026 + GFF2155 0.19 -0.1
846,027 - GFF2155 0.19 -0.5
846,027 - GFF2155 0.19 +0.3
846,104 + GFF2155 0.22 -1.3
846,110 + GFF2155 0.22 -0.2
846,110 + GFF2155 0.22 +1.0
846,110 + GFF2155 0.22 -0.4
846,110 + GFF2155 0.22 -0.5
846,134 + GFF2155 0.23 +0.6
846,134 + GFF2155 0.23 -0.4
846,212 + GFF2155 0.26 +0.8
846,212 + GFF2155 0.26 +0.1
846,212 + GFF2155 0.26 -0.3
846,212 + GFF2155 0.26 +1.4
846,212 + GFF2155 0.26 -0.1
846,212 + GFF2155 0.26 -0.8
846,213 - GFF2155 0.26 -0.9
846,213 - GFF2155 0.26 +0.1
846,213 - GFF2155 0.26 +0.2
846,213 - GFF2155 0.26 -1.1
846,213 - GFF2155 0.26 +0.3
846,213 - GFF2155 0.26 +1.1
846,213 - GFF2155 0.26 -1.5
846,213 - GFF2155 0.26 -1.2
846,213 - GFF2155 0.26 -0.1
846,213 - GFF2155 0.26 +0.6
846,213 - GFF2155 0.26 -1.2
846,374 + GFF2155 0.32 +0.3
846,374 + GFF2155 0.32 +0.3
846,375 - GFF2155 0.32 -1.6
846,375 - GFF2155 0.32 -0.3
846,375 - GFF2155 0.32 +2.0

Or see this region's nucleotide sequence