Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2130 and GFF2131 overlap by 7 nucleotides GFF2131 and GFF2132 are separated by 272 nucleotides GFF2132 and GFF2133 are separated by 131 nucleotides
GFF2130 - hypothetical protein, at 815,004 to 817,079
GFF2130
GFF2131 - hypothetical protein, at 817,073 to 817,453
GFF2131
GFF2132 - hypothetical protein, at 817,726 to 817,971
GFF2132
GFF2133 - hypothetical protein, at 818,103 to 819,020
GFF2133
Position (kb) 817
818 Strain fitness (log2 ratio) -2
-1
0
1 at 816.727 kb on + strand, within GFF2130 at 816.728 kb on - strand, within GFF2130 at 817.147 kb on - strand, within GFF2131 at 817.446 kb on + strand at 817.446 kb on + strand at 817.892 kb on + strand, within GFF2132 at 817.892 kb on + strand, within GFF2132 at 817.916 kb on + strand, within GFF2132 at 817.916 kb on + strand, within GFF2132 at 817.917 kb on - strand, within GFF2132 at 818.058 kb on + strand at 818.059 kb on - strand at 818.059 kb on - strand at 818.074 kb on + strand at 818.075 kb on - strand at 818.090 kb on + strand at 818.091 kb on - strand at 818.271 kb on + strand, within GFF2133 at 818.272 kb on - strand, within GFF2133 at 818.272 kb on - strand, within GFF2133 at 818.272 kb on - strand, within GFF2133 at 818.275 kb on + strand, within GFF2133 at 818.275 kb on + strand, within GFF2133 at 818.275 kb on + strand, within GFF2133 at 818.276 kb on - strand, within GFF2133 at 818.276 kb on - strand, within GFF2133 at 818.276 kb on - strand, within GFF2133 at 818.302 kb on - strand, within GFF2133 at 818.329 kb on - strand, within GFF2133 at 818.337 kb on + strand, within GFF2133 at 818.337 kb on + strand, within GFF2133 at 818.413 kb on + strand, within GFF2133 at 818.463 kb on + strand, within GFF2133 at 818.464 kb on - strand, within GFF2133 at 818.465 kb on + strand, within GFF2133 at 818.466 kb on - strand, within GFF2133 at 818.467 kb on + strand, within GFF2133 at 818.543 kb on + strand, within GFF2133 at 818.555 kb on + strand, within GFF2133 at 818.556 kb on - strand, within GFF2133 at 818.673 kb on + strand, within GFF2133 at 818.728 kb on - strand, within GFF2133 at 818.728 kb on - strand, within GFF2133 at 818.728 kb on - strand, within GFF2133 at 818.753 kb on + strand, within GFF2133 at 818.839 kb on + strand, within GFF2133 at 818.840 kb on - strand, within GFF2133 at 818.889 kb on + strand, within GFF2133 at 818.889 kb on + strand, within GFF2133 at 818.889 kb on + strand, within GFF2133 at 818.889 kb on + strand, within GFF2133 at 818.910 kb on + strand, within GFF2133 at 818.946 kb on + strand at 818.947 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 816,727 + GFF2130 0.83 -0.2 816,728 - GFF2130 0.83 -1.3 817,147 - GFF2131 0.19 -0.7 817,446 + +0.2 817,446 + +0.6 817,892 + GFF2132 0.67 -0.3 817,892 + GFF2132 0.67 +0.6 817,916 + GFF2132 0.77 -0.3 817,916 + GFF2132 0.77 -0.3 817,917 - GFF2132 0.78 +1.6 818,058 + -0.2 818,059 - +0.7 818,059 - +0.5 818,074 + -0.0 818,075 - -0.2 818,090 + -1.7 818,091 - +0.3 818,271 + GFF2133 0.18 -1.2 818,272 - GFF2133 0.18 +0.1 818,272 - GFF2133 0.18 -0.4 818,272 - GFF2133 0.18 -1.9 818,275 + GFF2133 0.19 -0.9 818,275 + GFF2133 0.19 -1.0 818,275 + GFF2133 0.19 -0.5 818,276 - GFF2133 0.19 -2.2 818,276 - GFF2133 0.19 +0.2 818,276 - GFF2133 0.19 +0.2 818,302 - GFF2133 0.22 -0.1 818,329 - GFF2133 0.25 -1.3 818,337 + GFF2133 0.25 -1.1 818,337 + GFF2133 0.25 -0.4 818,413 + GFF2133 0.34 +0.0 818,463 + GFF2133 0.39 +0.4 818,464 - GFF2133 0.39 -0.3 818,465 + GFF2133 0.39 -1.0 818,466 - GFF2133 0.40 -0.9 818,467 + GFF2133 0.40 -0.5 818,543 + GFF2133 0.48 -0.0 818,555 + GFF2133 0.49 +0.6 818,556 - GFF2133 0.49 +1.0 818,673 + GFF2133 0.62 -0.4 818,728 - GFF2133 0.68 +0.3 818,728 - GFF2133 0.68 -0.7 818,728 - GFF2133 0.68 +0.5 818,753 + GFF2133 0.71 -0.7 818,839 + GFF2133 0.80 +0.5 818,840 - GFF2133 0.80 -0.4 818,889 + GFF2133 0.86 +0.9 818,889 + GFF2133 0.86 -0.7 818,889 + GFF2133 0.86 -0.6 818,889 + GFF2133 0.86 +0.2 818,910 + GFF2133 0.88 +0.4 818,946 + -0.2 818,947 - +0.5
Or see this region's nucleotide sequence