Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2127 and GFF2128 are separated by 14 nucleotides GFF2128 and GFF2129 are separated by 198 nucleotides GFF2129 and GFF2130 are separated by 154 nucleotides GFF2130 and GFF2131 overlap by 7 nucleotides GFF2131 and GFF2132 are separated by 272 nucleotides
GFF2127 - hypothetical protein, at 813,870 to 814,118
GFF2127
GFF2128 - hypothetical protein, at 814,133 to 814,417
GFF2128
GFF2129 - hypothetical protein, at 814,616 to 814,849
GFF2129
GFF2130 - hypothetical protein, at 815,004 to 817,079
GFF2130
GFF2131 - hypothetical protein, at 817,073 to 817,453
GFF2131
GFF2132 - hypothetical protein, at 817,726 to 817,971
GFF2132
Position (kb) 815
816
817
818 Strain fitness (log2 ratio) -2
-1
0
1 at 814.101 kb on - strand at 814.150 kb on - strand at 814.188 kb on + strand, within GFF2128 at 814.189 kb on - strand, within GFF2128 at 814.368 kb on + strand, within GFF2128 at 814.368 kb on + strand, within GFF2128 at 814.369 kb on - strand, within GFF2128 at 814.369 kb on - strand, within GFF2128 at 814.369 kb on - strand, within GFF2128 at 814.443 kb on + strand at 814.444 kb on - strand at 814.527 kb on + strand at 814.615 kb on + strand at 814.615 kb on + strand at 814.615 kb on + strand at 814.615 kb on + strand at 814.615 kb on + strand at 814.615 kb on + strand at 814.616 kb on - strand at 814.920 kb on + strand at 814.920 kb on + strand at 814.921 kb on - strand at 814.925 kb on + strand at 814.926 kb on - strand at 814.926 kb on - strand at 814.926 kb on - strand at 814.929 kb on + strand at 814.929 kb on + strand at 814.960 kb on - strand at 814.960 kb on - strand at 814.994 kb on + strand at 814.994 kb on + strand at 814.995 kb on - strand at 814.995 kb on - strand at 815.055 kb on - strand at 815.055 kb on - strand at 815.140 kb on + strand at 815.141 kb on - strand at 815.141 kb on - strand at 815.141 kb on - strand at 815.141 kb on - strand at 815.328 kb on + strand, within GFF2130 at 815.329 kb on - strand, within GFF2130 at 815.499 kb on + strand, within GFF2130 at 815.500 kb on - strand, within GFF2130 at 815.614 kb on - strand, within GFF2130 at 815.693 kb on + strand, within GFF2130 at 815.694 kb on - strand, within GFF2130 at 815.795 kb on + strand, within GFF2130 at 815.795 kb on + strand, within GFF2130 at 815.862 kb on + strand, within GFF2130 at 815.863 kb on - strand, within GFF2130 at 816.096 kb on + strand, within GFF2130 at 816.097 kb on - strand, within GFF2130 at 816.295 kb on + strand, within GFF2130 at 816.295 kb on + strand, within GFF2130 at 816.473 kb on - strand, within GFF2130 at 816.476 kb on + strand, within GFF2130 at 816.476 kb on + strand, within GFF2130 at 816.476 kb on + strand, within GFF2130 at 816.476 kb on + strand, within GFF2130 at 816.476 kb on + strand, within GFF2130 at 816.608 kb on + strand, within GFF2130 at 816.608 kb on + strand, within GFF2130 at 816.608 kb on + strand, within GFF2130 at 816.608 kb on + strand, within GFF2130 at 816.608 kb on + strand, within GFF2130 at 816.608 kb on + strand, within GFF2130 at 816.608 kb on + strand, within GFF2130 at 816.608 kb on + strand, within GFF2130 at 816.608 kb on + strand, within GFF2130 at 816.609 kb on - strand, within GFF2130 at 816.609 kb on - strand, within GFF2130 at 816.610 kb on + strand, within GFF2130 at 816.610 kb on + strand, within GFF2130 at 816.610 kb on + strand, within GFF2130 at 816.610 kb on + strand, within GFF2130 at 816.610 kb on + strand, within GFF2130 at 816.610 kb on + strand, within GFF2130 at 816.611 kb on - strand, within GFF2130 at 816.611 kb on - strand, within GFF2130 at 816.611 kb on - strand, within GFF2130 at 816.611 kb on - strand, within GFF2130 at 816.611 kb on - strand, within GFF2130 at 816.727 kb on + strand, within GFF2130 at 816.728 kb on - strand, within GFF2130 at 817.147 kb on - strand, within GFF2131 at 817.446 kb on + strand at 817.446 kb on + strand at 817.892 kb on + strand, within GFF2132 at 817.892 kb on + strand, within GFF2132 at 817.916 kb on + strand, within GFF2132 at 817.916 kb on + strand, within GFF2132 at 817.917 kb on - strand, within GFF2132 at 818.058 kb on + strand at 818.059 kb on - strand at 818.059 kb on - strand at 818.074 kb on + strand at 818.075 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 814,101 - -0.3 814,150 - -0.1 814,188 + GFF2128 0.19 +0.3 814,189 - GFF2128 0.20 -1.5 814,368 + GFF2128 0.82 +0.6 814,368 + GFF2128 0.82 +0.6 814,369 - GFF2128 0.83 +0.3 814,369 - GFF2128 0.83 -0.0 814,369 - GFF2128 0.83 +0.8 814,443 + +0.2 814,444 - -2.0 814,527 + -0.5 814,615 + -0.2 814,615 + +0.4 814,615 + -0.5 814,615 + +0.8 814,615 + +0.1 814,615 + -1.7 814,616 - -1.7 814,920 + -0.1 814,920 + -0.0 814,921 - -0.8 814,925 + -0.4 814,926 - -0.5 814,926 - +0.4 814,926 - +1.2 814,929 + -1.7 814,929 + +0.2 814,960 - -0.1 814,960 - -0.2 814,994 + +0.1 814,994 + +0.2 814,995 - +0.1 814,995 - -0.2 815,055 - -0.2 815,055 - +0.5 815,140 + +0.5 815,141 - -0.9 815,141 - -1.0 815,141 - +0.9 815,141 - -0.3 815,328 + GFF2130 0.16 +0.4 815,329 - GFF2130 0.16 -0.5 815,499 + GFF2130 0.24 +0.1 815,500 - GFF2130 0.24 -1.8 815,614 - GFF2130 0.29 -0.0 815,693 + GFF2130 0.33 -0.0 815,694 - GFF2130 0.33 +0.6 815,795 + GFF2130 0.38 +0.0 815,795 + GFF2130 0.38 +0.6 815,862 + GFF2130 0.41 -0.2 815,863 - GFF2130 0.41 -2.1 816,096 + GFF2130 0.53 -1.1 816,097 - GFF2130 0.53 +0.4 816,295 + GFF2130 0.62 +0.2 816,295 + GFF2130 0.62 +1.0 816,473 - GFF2130 0.71 +0.3 816,476 + GFF2130 0.71 -0.4 816,476 + GFF2130 0.71 -1.5 816,476 + GFF2130 0.71 -1.5 816,476 + GFF2130 0.71 +0.3 816,476 + GFF2130 0.71 -1.0 816,608 + GFF2130 0.77 +0.2 816,608 + GFF2130 0.77 -0.0 816,608 + GFF2130 0.77 -0.9 816,608 + GFF2130 0.77 -0.6 816,608 + GFF2130 0.77 -0.8 816,608 + GFF2130 0.77 -0.1 816,608 + GFF2130 0.77 -1.8 816,608 + GFF2130 0.77 -0.2 816,608 + GFF2130 0.77 -0.8 816,609 - GFF2130 0.77 +0.1 816,609 - GFF2130 0.77 -0.1 816,610 + GFF2130 0.77 +0.6 816,610 + GFF2130 0.77 -0.3 816,610 + GFF2130 0.77 +0.1 816,610 + GFF2130 0.77 +0.2 816,610 + GFF2130 0.77 -1.0 816,610 + GFF2130 0.77 -0.1 816,611 - GFF2130 0.77 +0.1 816,611 - GFF2130 0.77 -0.1 816,611 - GFF2130 0.77 -0.3 816,611 - GFF2130 0.77 +0.1 816,611 - GFF2130 0.77 +0.1 816,727 + GFF2130 0.83 -0.2 816,728 - GFF2130 0.83 -1.3 817,147 - GFF2131 0.19 -0.7 817,446 + +0.2 817,446 + +0.6 817,892 + GFF2132 0.67 -0.3 817,892 + GFF2132 0.67 +0.6 817,916 + GFF2132 0.77 -0.3 817,916 + GFF2132 0.77 -0.3 817,917 - GFF2132 0.78 +1.6 818,058 + -0.2 818,059 - +0.7 818,059 - +0.5 818,074 + -0.0 818,075 - -0.2
Or see this region's nucleotide sequence