Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2013 and GFF2014 are separated by 227 nucleotides GFF2014 and GFF2015 are separated by 18 nucleotides GFF2015 and GFF2016 are separated by 87 nucleotides
GFF2013 - Vitamin B12 transporter BtuB, at 684,756 to 687,314
GFF2013
GFF2014 - Nitrobenzene nitroreductase, at 687,542 to 688,249
GFF2014
GFF2015 - hypothetical protein, at 688,268 to 688,774
GFF2015
GFF2016 - HTH-type transcriptional regulator CdhR, at 688,862 to 689,797
GFF2016
Position (kb) 687
688
689 Strain fitness (log2 ratio) -1
0
1
2 at 686.655 kb on + strand, within GFF2013 at 686.655 kb on + strand, within GFF2013 at 686.655 kb on + strand, within GFF2013 at 686.655 kb on + strand, within GFF2013 at 686.722 kb on - strand, within GFF2013 at 686.781 kb on + strand, within GFF2013 at 686.784 kb on + strand, within GFF2013 at 686.784 kb on + strand, within GFF2013 at 686.784 kb on + strand, within GFF2013 at 686.785 kb on - strand, within GFF2013 at 686.785 kb on - strand, within GFF2013 at 686.785 kb on - strand, within GFF2013 at 686.785 kb on - strand, within GFF2013 at 686.835 kb on + strand, within GFF2013 at 686.835 kb on + strand, within GFF2013 at 686.835 kb on + strand, within GFF2013 at 686.835 kb on + strand, within GFF2013 at 686.835 kb on + strand, within GFF2013 at 686.836 kb on - strand, within GFF2013 at 686.836 kb on - strand, within GFF2013 at 686.859 kb on + strand, within GFF2013 at 686.868 kb on + strand, within GFF2013 at 686.869 kb on - strand, within GFF2013 at 686.874 kb on + strand, within GFF2013 at 686.875 kb on - strand, within GFF2013 at 686.875 kb on - strand, within GFF2013 at 686.875 kb on - strand, within GFF2013 at 686.875 kb on - strand, within GFF2013 at 686.879 kb on - strand, within GFF2013 at 686.889 kb on + strand, within GFF2013 at 686.904 kb on + strand, within GFF2013 at 686.918 kb on + strand, within GFF2013 at 686.919 kb on - strand, within GFF2013 at 687.012 kb on + strand, within GFF2013 at 687.013 kb on - strand, within GFF2013 at 687.014 kb on + strand, within GFF2013 at 687.014 kb on + strand, within GFF2013 at 687.015 kb on - strand, within GFF2013 at 687.015 kb on - strand, within GFF2013 at 687.072 kb on + strand at 687.072 kb on + strand at 687.072 kb on + strand at 687.072 kb on + strand at 687.073 kb on - strand at 687.073 kb on - strand at 687.114 kb on + strand at 687.114 kb on + strand at 687.141 kb on + strand at 687.142 kb on - strand at 687.175 kb on - strand at 687.210 kb on + strand at 687.211 kb on - strand at 687.235 kb on - strand at 687.235 kb on - strand at 687.235 kb on - strand at 687.288 kb on + strand at 687.288 kb on + strand at 687.312 kb on + strand at 687.313 kb on - strand at 687.313 kb on - strand at 687.490 kb on + strand at 687.559 kb on + strand at 687.800 kb on + strand, within GFF2014 at 687.801 kb on - strand, within GFF2014 at 687.801 kb on - strand, within GFF2014 at 687.801 kb on - strand, within GFF2014 at 687.806 kb on + strand, within GFF2014 at 687.806 kb on + strand, within GFF2014 at 687.806 kb on + strand, within GFF2014 at 687.806 kb on + strand, within GFF2014 at 687.806 kb on + strand, within GFF2014 at 687.806 kb on + strand, within GFF2014 at 687.806 kb on + strand, within GFF2014 at 687.806 kb on + strand, within GFF2014 at 687.806 kb on + strand, within GFF2014 at 687.807 kb on - strand, within GFF2014 at 687.807 kb on - strand, within GFF2014 at 687.807 kb on - strand, within GFF2014 at 687.807 kb on - strand, within GFF2014 at 687.807 kb on - strand, within GFF2014 at 687.807 kb on - strand, within GFF2014 at 687.809 kb on + strand, within GFF2014 at 687.818 kb on - strand, within GFF2014 at 687.834 kb on - strand, within GFF2014 at 687.870 kb on - strand, within GFF2014 at 687.907 kb on + strand, within GFF2014 at 687.908 kb on - strand, within GFF2014 at 687.908 kb on - strand, within GFF2014 at 688.088 kb on + strand, within GFF2014 at 688.089 kb on - strand, within GFF2014 at 688.089 kb on - strand, within GFF2014 at 688.089 kb on - strand, within GFF2014 at 688.130 kb on + strand, within GFF2014 at 688.734 kb on + strand at 688.735 kb on - strand at 688.735 kb on - strand at 688.801 kb on + strand at 688.850 kb on + strand at 688.884 kb on - strand at 688.884 kb on - strand at 688.884 kb on - strand at 688.962 kb on + strand, within GFF2016 at 688.962 kb on + strand, within GFF2016 at 688.962 kb on + strand, within GFF2016 at 688.962 kb on + strand, within GFF2016 at 688.962 kb on + strand, within GFF2016 at 688.962 kb on + strand, within GFF2016 at 688.962 kb on + strand, within GFF2016 at 688.963 kb on - strand, within GFF2016 at 688.963 kb on - strand, within GFF2016 at 688.963 kb on - strand, within GFF2016 at 689.059 kb on + strand, within GFF2016
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 686,655 + GFF2013 0.74 -0.3 686,655 + GFF2013 0.74 -0.1 686,655 + GFF2013 0.74 -0.1 686,655 + GFF2013 0.74 +0.4 686,722 - GFF2013 0.77 +0.5 686,781 + GFF2013 0.79 +0.2 686,784 + GFF2013 0.79 +0.4 686,784 + GFF2013 0.79 -1.6 686,784 + GFF2013 0.79 +1.4 686,785 - GFF2013 0.79 -0.7 686,785 - GFF2013 0.79 -1.1 686,785 - GFF2013 0.79 +0.5 686,785 - GFF2013 0.79 +0.8 686,835 + GFF2013 0.81 -0.2 686,835 + GFF2013 0.81 +0.1 686,835 + GFF2013 0.81 +0.3 686,835 + GFF2013 0.81 -0.1 686,835 + GFF2013 0.81 -0.5 686,836 - GFF2013 0.81 -0.7 686,836 - GFF2013 0.81 +0.5 686,859 + GFF2013 0.82 +1.4 686,868 + GFF2013 0.83 -0.8 686,869 - GFF2013 0.83 +0.3 686,874 + GFF2013 0.83 -1.6 686,875 - GFF2013 0.83 -1.0 686,875 - GFF2013 0.83 -0.7 686,875 - GFF2013 0.83 -0.4 686,875 - GFF2013 0.83 +0.5 686,879 - GFF2013 0.83 -0.6 686,889 + GFF2013 0.83 +1.9 686,904 + GFF2013 0.84 -0.4 686,918 + GFF2013 0.84 -0.9 686,919 - GFF2013 0.85 -1.3 687,012 + GFF2013 0.88 -1.7 687,013 - GFF2013 0.88 -0.6 687,014 + GFF2013 0.88 +0.5 687,014 + GFF2013 0.88 -1.2 687,015 - GFF2013 0.88 +0.2 687,015 - GFF2013 0.88 -1.2 687,072 + +0.5 687,072 + +0.5 687,072 + +0.1 687,072 + +1.1 687,073 - -0.4 687,073 - -0.8 687,114 + +0.2 687,114 + -0.1 687,141 + +0.6 687,142 - +0.4 687,175 - -0.1 687,210 + +1.0 687,211 - +0.6 687,235 - -0.5 687,235 - -0.3 687,235 - +0.1 687,288 + +0.6 687,288 + +0.6 687,312 + +1.2 687,313 - -0.1 687,313 - +0.4 687,490 + -0.7 687,559 + +0.2 687,800 + GFF2014 0.36 -0.3 687,801 - GFF2014 0.37 +1.5 687,801 - GFF2014 0.37 -1.1 687,801 - GFF2014 0.37 -0.4 687,806 + GFF2014 0.37 -0.5 687,806 + GFF2014 0.37 +0.3 687,806 + GFF2014 0.37 -0.5 687,806 + GFF2014 0.37 -0.9 687,806 + GFF2014 0.37 -1.7 687,806 + GFF2014 0.37 -0.9 687,806 + GFF2014 0.37 -0.0 687,806 + GFF2014 0.37 -0.1 687,806 + GFF2014 0.37 +1.0 687,807 - GFF2014 0.37 -0.4 687,807 - GFF2014 0.37 -1.1 687,807 - GFF2014 0.37 -0.3 687,807 - GFF2014 0.37 -0.9 687,807 - GFF2014 0.37 +0.8 687,807 - GFF2014 0.37 +0.1 687,809 + GFF2014 0.38 +1.1 687,818 - GFF2014 0.39 +1.0 687,834 - GFF2014 0.41 +0.3 687,870 - GFF2014 0.46 -0.1 687,907 + GFF2014 0.52 -0.5 687,908 - GFF2014 0.52 +0.3 687,908 - GFF2014 0.52 -0.2 688,088 + GFF2014 0.77 +0.1 688,089 - GFF2014 0.77 +1.1 688,089 - GFF2014 0.77 -0.9 688,089 - GFF2014 0.77 -0.4 688,130 + GFF2014 0.83 -0.1 688,734 + -0.0 688,735 - -0.1 688,735 - -0.6 688,801 + +0.3 688,850 + -0.9 688,884 - -0.3 688,884 - -0.7 688,884 - -0.2 688,962 + GFF2016 0.11 +0.4 688,962 + GFF2016 0.11 +1.6 688,962 + GFF2016 0.11 -1.1 688,962 + GFF2016 0.11 -1.2 688,962 + GFF2016 0.11 +0.7 688,962 + GFF2016 0.11 -0.4 688,962 + GFF2016 0.11 -0.3 688,963 - GFF2016 0.11 -1.0 688,963 - GFF2016 0.11 -1.0 688,963 - GFF2016 0.11 -1.0 689,059 + GFF2016 0.21 -1.1
Or see this region's nucleotide sequence