Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2009 and GFF2010 overlap by 1 nucleotides GFF2010 and GFF2011 are separated by 208 nucleotides
GFF2009 - Glutarate-semialdehyde dehydrogenase, at 679,141 to 680,604
GFF2009
GFF2010 - 5-(hydroxymethyl)furfural oxidase, at 680,604 to 682,319
GFF2010
GFF2011 - PCP degradation transcriptional activation protein, at 682,528 to 683,439
GFF2011
Position (kb) 680
681
682
683 Strain fitness (log2 ratio) -2
-1
0
1 at 679.857 kb on + strand, within GFF2009 at 679.858 kb on - strand, within GFF2009 at 679.858 kb on - strand, within GFF2009 at 680.042 kb on - strand, within GFF2009 at 680.380 kb on + strand, within GFF2009 at 680.381 kb on - strand, within GFF2009 at 680.381 kb on - strand, within GFF2009 at 680.399 kb on + strand, within GFF2009 at 680.399 kb on + strand, within GFF2009 at 680.399 kb on + strand, within GFF2009 at 680.510 kb on - strand at 680.542 kb on + strand at 680.581 kb on + strand at 680.581 kb on + strand at 680.581 kb on + strand at 680.582 kb on - strand at 680.654 kb on - strand at 680.784 kb on + strand, within GFF2010 at 680.880 kb on + strand, within GFF2010 at 681.012 kb on + strand, within GFF2010 at 681.089 kb on + strand, within GFF2010 at 681.090 kb on - strand, within GFF2010 at 681.196 kb on + strand, within GFF2010 at 681.196 kb on + strand, within GFF2010 at 681.197 kb on - strand, within GFF2010 at 681.253 kb on - strand, within GFF2010 at 681.253 kb on - strand, within GFF2010 at 681.556 kb on - strand, within GFF2010 at 681.572 kb on - strand, within GFF2010 at 681.588 kb on + strand, within GFF2010 at 681.589 kb on - strand, within GFF2010 at 681.589 kb on - strand, within GFF2010 at 681.657 kb on + strand, within GFF2010 at 681.657 kb on + strand, within GFF2010 at 681.657 kb on + strand, within GFF2010 at 681.658 kb on - strand, within GFF2010 at 681.714 kb on + strand, within GFF2010 at 682.215 kb on - strand at 682.216 kb on - strand at 682.264 kb on - strand at 682.421 kb on - strand at 682.477 kb on + strand at 682.477 kb on + strand at 682.478 kb on - strand at 682.499 kb on - strand at 682.529 kb on + strand at 682.530 kb on - strand at 682.871 kb on + strand, within GFF2011 at 682.871 kb on + strand, within GFF2011 at 682.872 kb on - strand, within GFF2011 at 682.872 kb on - strand, within GFF2011 at 682.872 kb on - strand, within GFF2011 at 682.872 kb on - strand, within GFF2011 at 682.872 kb on - strand, within GFF2011 at 682.872 kb on - strand, within GFF2011 at 682.872 kb on - strand, within GFF2011 at 682.872 kb on - strand, within GFF2011 at 682.931 kb on + strand, within GFF2011 at 682.931 kb on + strand, within GFF2011 at 682.931 kb on + strand, within GFF2011 at 682.931 kb on + strand, within GFF2011 at 682.931 kb on + strand, within GFF2011 at 682.931 kb on + strand, within GFF2011 at 682.931 kb on + strand, within GFF2011 at 682.931 kb on + strand, within GFF2011 at 682.932 kb on - strand, within GFF2011 at 682.932 kb on - strand, within GFF2011 at 682.932 kb on - strand, within GFF2011 at 683.124 kb on + strand, within GFF2011 at 683.124 kb on + strand, within GFF2011 at 683.124 kb on + strand, within GFF2011 at 683.125 kb on - strand, within GFF2011 at 683.126 kb on + strand, within GFF2011 at 683.126 kb on + strand, within GFF2011 at 683.126 kb on + strand, within GFF2011 at 683.127 kb on - strand, within GFF2011 at 683.127 kb on - strand, within GFF2011 at 683.127 kb on - strand, within GFF2011 at 683.127 kb on - strand, within GFF2011
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 679,857 + GFF2009 0.49 +0.1 679,858 - GFF2009 0.49 +0.3 679,858 - GFF2009 0.49 +0.1 680,042 - GFF2009 0.62 -0.5 680,380 + GFF2009 0.85 +0.3 680,381 - GFF2009 0.85 +0.1 680,381 - GFF2009 0.85 +0.1 680,399 + GFF2009 0.86 -0.1 680,399 + GFF2009 0.86 -0.1 680,399 + GFF2009 0.86 -0.1 680,510 - +0.4 680,542 + -1.1 680,581 + -0.5 680,581 + -0.3 680,581 + +0.7 680,582 - +0.4 680,654 - -1.8 680,784 + GFF2010 0.10 -0.9 680,880 + GFF2010 0.16 +0.6 681,012 + GFF2010 0.24 +0.1 681,089 + GFF2010 0.28 +0.1 681,090 - GFF2010 0.28 -1.1 681,196 + GFF2010 0.34 -0.1 681,196 + GFF2010 0.34 -1.3 681,197 - GFF2010 0.35 -2.6 681,253 - GFF2010 0.38 -0.5 681,253 - GFF2010 0.38 +0.4 681,556 - GFF2010 0.55 -0.0 681,572 - GFF2010 0.56 +1.5 681,588 + GFF2010 0.57 -0.9 681,589 - GFF2010 0.57 -0.2 681,589 - GFF2010 0.57 -2.3 681,657 + GFF2010 0.61 -0.7 681,657 + GFF2010 0.61 -0.4 681,657 + GFF2010 0.61 -1.5 681,658 - GFF2010 0.61 -0.4 681,714 + GFF2010 0.65 +0.1 682,215 - +0.5 682,216 - +0.5 682,264 - +0.3 682,421 - +1.6 682,477 + +0.1 682,477 + +1.0 682,478 - +0.2 682,499 - -0.9 682,529 + +0.5 682,530 - +1.4 682,871 + GFF2011 0.38 -0.1 682,871 + GFF2011 0.38 +0.4 682,872 - GFF2011 0.38 +0.8 682,872 - GFF2011 0.38 -0.4 682,872 - GFF2011 0.38 +1.2 682,872 - GFF2011 0.38 -2.6 682,872 - GFF2011 0.38 -0.9 682,872 - GFF2011 0.38 -0.0 682,872 - GFF2011 0.38 -0.5 682,872 - GFF2011 0.38 -0.1 682,931 + GFF2011 0.44 -0.1 682,931 + GFF2011 0.44 -0.9 682,931 + GFF2011 0.44 +0.1 682,931 + GFF2011 0.44 +1.3 682,931 + GFF2011 0.44 -0.4 682,931 + GFF2011 0.44 -1.6 682,931 + GFF2011 0.44 -0.1 682,931 + GFF2011 0.44 +0.7 682,932 - GFF2011 0.44 -0.9 682,932 - GFF2011 0.44 -0.8 682,932 - GFF2011 0.44 -0.6 683,124 + GFF2011 0.65 -0.4 683,124 + GFF2011 0.65 +0.5 683,124 + GFF2011 0.65 -0.4 683,125 - GFF2011 0.65 +0.5 683,126 + GFF2011 0.66 -1.5 683,126 + GFF2011 0.66 +0.1 683,126 + GFF2011 0.66 +1.0 683,127 - GFF2011 0.66 +0.4 683,127 - GFF2011 0.66 +1.2 683,127 - GFF2011 0.66 +0.5 683,127 - GFF2011 0.66 -0.3
Or see this region's nucleotide sequence