Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1997 and GFF1998 are separated by 90 nucleotides GFF1998 and GFF1999 are separated by 68 nucleotides GFF1999 and GFF2000 overlap by 1 nucleotides
GFF1997 - Phenolic acid decarboxylase, at 663,898 to 665,331
GFF1997
GFF1998 - hypothetical protein, at 665,422 to 666,462
GFF1998
GFF1999 - Vitamin B12 import ATP-binding protein BtuD, at 666,531 to 667,367
GFF1999
GFF2000 - Putative aliphatic sulfonates transport permease protein SsuC, at 667,367 to 668,137
GFF2000
Position (kb) 665
666
667 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 664.443 kb on + strand, within GFF1997 at 664.443 kb on + strand, within GFF1997 at 664.444 kb on - strand, within GFF1997 at 664.453 kb on + strand, within GFF1997 at 664.456 kb on + strand, within GFF1997 at 664.456 kb on + strand, within GFF1997 at 664.724 kb on - strand, within GFF1997 at 664.726 kb on + strand, within GFF1997 at 664.726 kb on + strand, within GFF1997 at 664.727 kb on - strand, within GFF1997 at 664.727 kb on - strand, within GFF1997 at 664.792 kb on + strand, within GFF1997 at 664.792 kb on + strand, within GFF1997 at 664.792 kb on + strand, within GFF1997 at 664.793 kb on - strand, within GFF1997 at 664.793 kb on - strand, within GFF1997 at 664.793 kb on - strand, within GFF1997 at 664.793 kb on - strand, within GFF1997 at 664.793 kb on - strand, within GFF1997 at 664.793 kb on - strand, within GFF1997 at 664.793 kb on - strand, within GFF1997 at 664.793 kb on - strand, within GFF1997 at 664.793 kb on - strand, within GFF1997 at 665.070 kb on - strand, within GFF1997 at 665.546 kb on + strand, within GFF1998 at 665.547 kb on - strand, within GFF1998 at 665.547 kb on - strand, within GFF1998 at 665.695 kb on + strand, within GFF1998 at 665.695 kb on + strand, within GFF1998 at 665.695 kb on + strand, within GFF1998 at 665.696 kb on - strand, within GFF1998 at 665.696 kb on - strand, within GFF1998 at 665.761 kb on + strand, within GFF1998 at 665.767 kb on + strand, within GFF1998 at 665.768 kb on - strand, within GFF1998 at 665.917 kb on + strand, within GFF1998 at 665.917 kb on + strand, within GFF1998 at 665.917 kb on + strand, within GFF1998 at 665.918 kb on - strand, within GFF1998 at 665.938 kb on + strand, within GFF1998 at 665.938 kb on + strand, within GFF1998 at 665.938 kb on + strand, within GFF1998 at 666.094 kb on + strand, within GFF1998 at 666.094 kb on + strand, within GFF1998 at 666.094 kb on + strand, within GFF1998 at 666.094 kb on + strand, within GFF1998 at 666.095 kb on - strand, within GFF1998 at 666.095 kb on - strand, within GFF1998 at 666.151 kb on + strand, within GFF1998 at 666.152 kb on - strand, within GFF1998 at 666.442 kb on + strand at 666.619 kb on - strand, within GFF1999 at 666.852 kb on + strand, within GFF1999 at 666.853 kb on - strand, within GFF1999 at 666.911 kb on + strand, within GFF1999 at 666.945 kb on + strand, within GFF1999 at 667.285 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 664,443 + GFF1997 0.38 +0.1 664,443 + GFF1997 0.38 +0.4 664,444 - GFF1997 0.38 +0.7 664,453 + GFF1997 0.39 -0.1 664,456 + GFF1997 0.39 +0.5 664,456 + GFF1997 0.39 -2.2 664,724 - GFF1997 0.58 +1.0 664,726 + GFF1997 0.58 -0.5 664,726 + GFF1997 0.58 -1.8 664,727 - GFF1997 0.58 -0.1 664,727 - GFF1997 0.58 -0.1 664,792 + GFF1997 0.62 +0.4 664,792 + GFF1997 0.62 -1.1 664,792 + GFF1997 0.62 -0.4 664,793 - GFF1997 0.62 +0.2 664,793 - GFF1997 0.62 +1.1 664,793 - GFF1997 0.62 -0.0 664,793 - GFF1997 0.62 +0.1 664,793 - GFF1997 0.62 +0.5 664,793 - GFF1997 0.62 +0.6 664,793 - GFF1997 0.62 +0.4 664,793 - GFF1997 0.62 -2.0 664,793 - GFF1997 0.62 +0.3 665,070 - GFF1997 0.82 -0.8 665,546 + GFF1998 0.12 -0.8 665,547 - GFF1998 0.12 +1.1 665,547 - GFF1998 0.12 +0.4 665,695 + GFF1998 0.26 +0.3 665,695 + GFF1998 0.26 +0.4 665,695 + GFF1998 0.26 +1.5 665,696 - GFF1998 0.26 +1.1 665,696 - GFF1998 0.26 +0.5 665,761 + GFF1998 0.33 +1.6 665,767 + GFF1998 0.33 -0.1 665,768 - GFF1998 0.33 +0.6 665,917 + GFF1998 0.48 -0.3 665,917 + GFF1998 0.48 +0.2 665,917 + GFF1998 0.48 +0.6 665,918 - GFF1998 0.48 -0.3 665,938 + GFF1998 0.50 -0.7 665,938 + GFF1998 0.50 -0.2 665,938 + GFF1998 0.50 -0.4 666,094 + GFF1998 0.65 +0.2 666,094 + GFF1998 0.65 -0.6 666,094 + GFF1998 0.65 -0.6 666,094 + GFF1998 0.65 +0.1 666,095 - GFF1998 0.65 -0.2 666,095 - GFF1998 0.65 +3.9 666,151 + GFF1998 0.70 -0.1 666,152 - GFF1998 0.70 -0.6 666,442 + +1.0 666,619 - GFF1999 0.11 +0.2 666,852 + GFF1999 0.38 +0.0 666,853 - GFF1999 0.38 +0.7 666,911 + GFF1999 0.45 +0.5 666,945 + GFF1999 0.49 -0.1 667,285 - -0.1
Or see this region's nucleotide sequence