Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1986 and GFF1987 are separated by 20 nucleotides GFF1987 and GFF1988 overlap by 4 nucleotides GFF1988 and GFF1989 are separated by 9 nucleotides
GFF1986 - Cation/acetate symporter ActP, at 650,122 to 651,867
GFF1986
GFF1987 - hypothetical protein, at 651,888 to 653,480
GFF1987
GFF1988 - hypothetical protein, at 653,477 to 653,779
GFF1988
GFF1989 - Adaptive-response sensory-kinase SasA, at 653,789 to 656,563
GFF1989
Position (kb) 651
652
653
654 Strain fitness (log2 ratio) -2
-1
0
1
2 at 651.127 kb on + strand, within GFF1986 at 651.133 kb on + strand, within GFF1986 at 651.133 kb on + strand, within GFF1986 at 651.133 kb on + strand, within GFF1986 at 651.134 kb on - strand, within GFF1986 at 651.370 kb on + strand, within GFF1986 at 651.370 kb on + strand, within GFF1986 at 651.371 kb on - strand, within GFF1986 at 651.371 kb on - strand, within GFF1986 at 651.503 kb on - strand, within GFF1986 at 651.704 kb on - strand at 651.704 kb on - strand at 651.876 kb on + strand at 651.876 kb on + strand at 651.877 kb on - strand at 651.877 kb on - strand at 651.905 kb on + strand at 651.906 kb on - strand at 651.906 kb on - strand at 652.095 kb on + strand, within GFF1987 at 652.095 kb on + strand, within GFF1987 at 652.096 kb on - strand, within GFF1987 at 652.135 kb on + strand, within GFF1987 at 652.873 kb on + strand, within GFF1987 at 653.037 kb on + strand, within GFF1987 at 653.038 kb on - strand, within GFF1987 at 653.461 kb on - strand at 653.476 kb on + strand at 653.476 kb on + strand at 653.477 kb on - strand at 653.477 kb on - strand at 653.477 kb on - strand at 653.837 kb on + strand at 653.837 kb on + strand at 653.837 kb on + strand at 653.838 kb on - strand at 653.921 kb on + strand at 653.921 kb on + strand at 653.921 kb on + strand at 653.921 kb on + strand at 653.922 kb on - strand at 653.922 kb on - strand at 653.942 kb on + strand at 653.942 kb on + strand at 653.943 kb on - strand at 653.943 kb on - strand at 653.943 kb on - strand at 653.960 kb on + strand at 653.961 kb on - strand at 653.961 kb on - strand at 654.015 kb on - strand at 654.015 kb on - strand at 654.086 kb on + strand, within GFF1989 at 654.087 kb on - strand, within GFF1989 at 654.189 kb on - strand, within GFF1989 at 654.189 kb on - strand, within GFF1989 at 654.189 kb on - strand, within GFF1989 at 654.189 kb on - strand, within GFF1989 at 654.440 kb on + strand, within GFF1989
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 651,127 + GFF1986 0.58 -2.2 651,133 + GFF1986 0.58 +0.5 651,133 + GFF1986 0.58 -1.4 651,133 + GFF1986 0.58 +0.8 651,134 - GFF1986 0.58 -0.1 651,370 + GFF1986 0.71 +1.1 651,370 + GFF1986 0.71 -1.1 651,371 - GFF1986 0.72 +0.2 651,371 - GFF1986 0.72 +1.1 651,503 - GFF1986 0.79 +0.7 651,704 - -1.0 651,704 - +0.2 651,876 + +0.5 651,876 + -0.3 651,877 - -1.2 651,877 - +1.4 651,905 + +1.9 651,906 - -0.1 651,906 - +0.8 652,095 + GFF1987 0.13 +0.1 652,095 + GFF1987 0.13 +0.8 652,096 - GFF1987 0.13 +0.7 652,135 + GFF1987 0.16 -0.9 652,873 + GFF1987 0.62 -0.9 653,037 + GFF1987 0.72 +0.0 653,038 - GFF1987 0.72 -1.1 653,461 - -0.0 653,476 + +0.1 653,476 + -0.2 653,477 - +0.3 653,477 - -2.0 653,477 - -0.8 653,837 + +0.8 653,837 + +0.7 653,837 + -0.0 653,838 - -1.7 653,921 + +0.2 653,921 + -0.1 653,921 + +0.4 653,921 + +0.9 653,922 - -0.3 653,922 - +0.2 653,942 + +0.8 653,942 + -0.3 653,943 - +1.5 653,943 - -0.7 653,943 - +0.2 653,960 + +0.6 653,961 - -0.1 653,961 - -0.9 654,015 - +0.1 654,015 - +2.0 654,086 + GFF1989 0.11 +0.4 654,087 - GFF1989 0.11 -0.3 654,189 - GFF1989 0.14 +0.9 654,189 - GFF1989 0.14 -0.1 654,189 - GFF1989 0.14 +0.4 654,189 - GFF1989 0.14 +0.8 654,440 + GFF1989 0.23 -0.7
Or see this region's nucleotide sequence