Strain Fitness in Xanthobacter sp. DMC5 around GFF1935

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1934 and GFF1935 are separated by 9 nucleotidesGFF1935 and GFF1936 are separated by 104 nucleotides GFF1934 - Ribose-phosphate pyrophosphokinase, at 589,787 to 590,740 GFF1934 GFF1935 - hypothetical protein, at 590,750 to 591,541 GFF1935 GFF1936 - Branched-chain-amino-acid aminotransferase, at 591,646 to 592,539 GFF1936 Position (kb) 590 591 592Strain fitness (log2 ratio) -1 0 1at 590.745 kb on + strandat 590.746 kb on - strandat 590.901 kb on + strand, within GFF1935at 590.901 kb on + strand, within GFF1935at 590.902 kb on - strand, within GFF1935at 591.013 kb on - strand, within GFF1935at 591.013 kb on - strand, within GFF1935at 591.013 kb on - strand, within GFF1935at 591.013 kb on - strand, within GFF1935at 591.060 kb on + strand, within GFF1935at 591.533 kb on - strandat 591.589 kb on + strandat 591.623 kb on + strandat 591.624 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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590,745 + +0.0
590,746 - -0.2
590,901 + GFF1935 0.19 -0.1
590,901 + GFF1935 0.19 +0.1
590,902 - GFF1935 0.19 +0.3
591,013 - GFF1935 0.33 -1.1
591,013 - GFF1935 0.33 -0.5
591,013 - GFF1935 0.33 -0.0
591,013 - GFF1935 0.33 +1.0
591,060 + GFF1935 0.39 +0.1
591,533 - +1.0
591,589 + -0.4
591,623 + -0.6
591,624 - -0.7

Or see this region's nucleotide sequence