Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1879 and GFF1880 overlap by 1 nucleotides GFF1880 and GFF1881 are separated by 73 nucleotides GFF1881 and GFF1882 are separated by 179 nucleotides GFF1882 and GFF1883 are separated by 32 nucleotides
GFF1879 - putative glycine dehydrogenase (decarboxylating) subunit 1, at 540,918 to 542,258
GFF1879
GFF1880 - putative glycine dehydrogenase (decarboxylating) subunit 2, at 542,258 to 543,844
GFF1880
GFF1881 - RNA pyrophosphohydrolase, at 543,918 to 544,358
GFF1881
GFF1882 - hypothetical protein, at 544,538 to 544,672
GFF1882
GFF1883 - hypothetical protein, at 544,705 to 545,298
GFF1883
Position (kb) 542
543
544 Strain fitness (log2 ratio) -1
0
1
2 at 541.318 kb on - strand, within GFF1879 at 541.318 kb on - strand, within GFF1879 at 541.318 kb on - strand, within GFF1879 at 541.318 kb on - strand, within GFF1879 at 541.444 kb on - strand, within GFF1879 at 541.737 kb on + strand, within GFF1879 at 541.738 kb on - strand, within GFF1879 at 541.934 kb on + strand, within GFF1879 at 541.935 kb on - strand, within GFF1879 at 541.935 kb on - strand, within GFF1879 at 542.179 kb on + strand at 542.179 kb on + strand at 542.180 kb on - strand at 542.180 kb on - strand at 542.504 kb on + strand, within GFF1880 at 542.504 kb on + strand, within GFF1880 at 542.529 kb on - strand, within GFF1880 at 542.529 kb on - strand, within GFF1880 at 543.050 kb on + strand, within GFF1880 at 543.051 kb on - strand, within GFF1880 at 543.051 kb on - strand, within GFF1880 at 543.425 kb on + strand, within GFF1880 at 543.425 kb on + strand, within GFF1880 at 543.426 kb on - strand, within GFF1880 at 543.843 kb on - strand at 543.906 kb on + strand at 543.907 kb on - strand at 544.022 kb on + strand, within GFF1881 at 544.022 kb on + strand, within GFF1881 at 544.022 kb on + strand, within GFF1881 at 544.023 kb on - strand, within GFF1881 at 544.023 kb on - strand, within GFF1881 at 544.023 kb on - strand, within GFF1881 at 544.023 kb on - strand, within GFF1881 at 544.026 kb on + strand, within GFF1881 at 544.026 kb on + strand, within GFF1881 at 544.026 kb on + strand, within GFF1881 at 544.027 kb on - strand, within GFF1881 at 544.397 kb on + strand at 544.397 kb on + strand at 544.558 kb on - strand, within GFF1882 at 544.676 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 541,318 - GFF1879 0.30 +1.2 541,318 - GFF1879 0.30 -0.1 541,318 - GFF1879 0.30 -0.1 541,318 - GFF1879 0.30 -0.9 541,444 - GFF1879 0.39 -0.7 541,737 + GFF1879 0.61 +1.3 541,738 - GFF1879 0.61 -0.0 541,934 + GFF1879 0.76 -0.0 541,935 - GFF1879 0.76 +1.1 541,935 - GFF1879 0.76 +0.5 542,179 + +0.8 542,179 + -1.0 542,180 - +0.8 542,180 - +1.5 542,504 + GFF1880 0.16 -1.6 542,504 + GFF1880 0.16 -1.5 542,529 - GFF1880 0.17 -0.1 542,529 - GFF1880 0.17 -0.6 543,050 + GFF1880 0.50 -1.1 543,051 - GFF1880 0.50 -1.5 543,051 - GFF1880 0.50 -0.5 543,425 + GFF1880 0.74 +1.1 543,425 + GFF1880 0.74 -0.8 543,426 - GFF1880 0.74 +0.5 543,843 - +0.5 543,906 + +0.5 543,907 - +0.6 544,022 + GFF1881 0.24 +1.3 544,022 + GFF1881 0.24 +0.5 544,022 + GFF1881 0.24 +0.3 544,023 - GFF1881 0.24 -0.7 544,023 - GFF1881 0.24 -0.3 544,023 - GFF1881 0.24 -0.2 544,023 - GFF1881 0.24 +0.2 544,026 + GFF1881 0.24 +0.6 544,026 + GFF1881 0.24 +0.2 544,026 + GFF1881 0.24 +0.6 544,027 - GFF1881 0.25 +2.3 544,397 + +0.3 544,397 + -0.9 544,558 - GFF1882 0.15 +0.8 544,676 + +0.3
Or see this region's nucleotide sequence