Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1876 and GFF1877 are separated by 2 nucleotides GFF1877 and GFF1878 are separated by 18 nucleotides GFF1878 and GFF1879 are separated by 18 nucleotides GFF1879 and GFF1880 overlap by 1 nucleotides
GFF1876 - Aminomethyltransferase, at 538,864 to 540,030
GFF1876
GFF1877 - Glycine cleavage system H protein, at 540,033 to 540,404
GFF1877
GFF1878 - hypothetical protein, at 540,423 to 540,899
GFF1878
GFF1879 - putative glycine dehydrogenase (decarboxylating) subunit 1, at 540,918 to 542,258
GFF1879
GFF1880 - putative glycine dehydrogenase (decarboxylating) subunit 2, at 542,258 to 543,844
GFF1880
Position (kb) 540
541
542
543 Strain fitness (log2 ratio) -1
0
1 at 539.990 kb on + strand at 539.990 kb on + strand at 540.063 kb on + strand at 540.064 kb on - strand at 540.064 kb on - strand at 540.225 kb on + strand, within GFF1877 at 540.225 kb on + strand, within GFF1877 at 540.225 kb on + strand, within GFF1877 at 540.225 kb on + strand, within GFF1877 at 540.226 kb on - strand, within GFF1877 at 540.226 kb on - strand, within GFF1877 at 540.226 kb on - strand, within GFF1877 at 540.378 kb on + strand at 540.378 kb on + strand at 540.854 kb on - strand at 541.146 kb on + strand, within GFF1879 at 541.251 kb on + strand, within GFF1879 at 541.318 kb on - strand, within GFF1879 at 541.318 kb on - strand, within GFF1879 at 541.318 kb on - strand, within GFF1879 at 541.318 kb on - strand, within GFF1879 at 541.444 kb on - strand, within GFF1879 at 541.737 kb on + strand, within GFF1879 at 541.738 kb on - strand, within GFF1879 at 541.934 kb on + strand, within GFF1879 at 541.935 kb on - strand, within GFF1879 at 541.935 kb on - strand, within GFF1879 at 542.179 kb on + strand at 542.179 kb on + strand at 542.180 kb on - strand at 542.180 kb on - strand at 542.504 kb on + strand, within GFF1880 at 542.504 kb on + strand, within GFF1880 at 542.529 kb on - strand, within GFF1880 at 542.529 kb on - strand, within GFF1880 at 543.050 kb on + strand, within GFF1880 at 543.051 kb on - strand, within GFF1880 at 543.051 kb on - strand, within GFF1880
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 539,990 + +1.1 539,990 + -0.1 540,063 + -0.3 540,064 - +0.5 540,064 - -0.5 540,225 + GFF1877 0.52 +0.2 540,225 + GFF1877 0.52 -0.9 540,225 + GFF1877 0.52 +1.2 540,225 + GFF1877 0.52 +1.2 540,226 - GFF1877 0.52 +1.7 540,226 - GFF1877 0.52 +0.6 540,226 - GFF1877 0.52 -1.2 540,378 + -0.2 540,378 + +0.6 540,854 - -0.0 541,146 + GFF1879 0.17 +0.7 541,251 + GFF1879 0.25 +0.2 541,318 - GFF1879 0.30 +1.2 541,318 - GFF1879 0.30 -0.1 541,318 - GFF1879 0.30 -0.1 541,318 - GFF1879 0.30 -0.9 541,444 - GFF1879 0.39 -0.7 541,737 + GFF1879 0.61 +1.3 541,738 - GFF1879 0.61 -0.0 541,934 + GFF1879 0.76 -0.0 541,935 - GFF1879 0.76 +1.1 541,935 - GFF1879 0.76 +0.5 542,179 + +0.8 542,179 + -1.0 542,180 - +0.8 542,180 - +1.5 542,504 + GFF1880 0.16 -1.6 542,504 + GFF1880 0.16 -1.5 542,529 - GFF1880 0.17 -0.1 542,529 - GFF1880 0.17 -0.6 543,050 + GFF1880 0.50 -1.1 543,051 - GFF1880 0.50 -1.5 543,051 - GFF1880 0.50 -0.5
Or see this region's nucleotide sequence