Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1847 and GFF1848 overlap by 4 nucleotides GFF1848 and GFF1849 are separated by 16 nucleotides GFF1849 and GFF1850 are separated by 7 nucleotides
GFF1847 - Quinolinate synthase A, at 507,188 to 508,228
GFF1847
GFF1848 - L-aspartate oxidase, at 508,225 to 509,751
GFF1848
GFF1849 - putative nicotinate-nucleotide pyrophosphorylase [carboxylating], at 509,768 to 510,622
GFF1849
GFF1850 - hypothetical protein, at 510,630 to 511,418
GFF1850
Position (kb) 508
509
510 Strain fitness (log2 ratio) -2
-1
0
1 at 507.288 kb on - strand at 507.288 kb on - strand at 507.401 kb on + strand, within GFF1847 at 507.401 kb on + strand, within GFF1847 at 507.512 kb on + strand, within GFF1847 at 507.513 kb on - strand, within GFF1847 at 507.662 kb on + strand, within GFF1847 at 507.663 kb on - strand, within GFF1847 at 507.779 kb on + strand, within GFF1847 at 507.780 kb on - strand, within GFF1847 at 507.780 kb on - strand, within GFF1847 at 507.780 kb on - strand, within GFF1847 at 507.986 kb on + strand, within GFF1847 at 507.986 kb on + strand, within GFF1847 at 507.986 kb on + strand, within GFF1847 at 507.987 kb on - strand, within GFF1847 at 507.987 kb on - strand, within GFF1847 at 507.987 kb on - strand, within GFF1847 at 508.224 kb on + strand at 508.224 kb on + strand at 508.225 kb on - strand at 508.811 kb on - strand, within GFF1848 at 509.224 kb on + strand, within GFF1848 at 509.225 kb on - strand, within GFF1848 at 509.756 kb on + strand at 509.756 kb on + strand at 510.215 kb on + strand, within GFF1849 at 510.470 kb on - strand, within GFF1849 at 510.470 kb on - strand, within GFF1849 at 510.470 kb on - strand, within GFF1849
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 507,288 - -0.8 507,288 - -0.6 507,401 + GFF1847 0.20 -1.3 507,401 + GFF1847 0.20 -1.1 507,512 + GFF1847 0.31 -0.6 507,513 - GFF1847 0.31 +0.5 507,662 + GFF1847 0.46 -0.7 507,663 - GFF1847 0.46 -0.9 507,779 + GFF1847 0.57 -0.5 507,780 - GFF1847 0.57 -0.3 507,780 - GFF1847 0.57 -1.2 507,780 - GFF1847 0.57 -0.0 507,986 + GFF1847 0.77 +1.5 507,986 + GFF1847 0.77 +0.0 507,986 + GFF1847 0.77 -2.2 507,987 - GFF1847 0.77 -2.4 507,987 - GFF1847 0.77 -2.3 507,987 - GFF1847 0.77 -0.2 508,224 + +0.3 508,224 + +0.1 508,225 - -0.5 508,811 - GFF1848 0.38 -1.1 509,224 + GFF1848 0.65 -1.2 509,225 - GFF1848 0.65 -1.2 509,756 + -0.4 509,756 + -0.3 510,215 + GFF1849 0.52 -1.0 510,470 - GFF1849 0.82 +0.2 510,470 - GFF1849 0.82 -1.6 510,470 - GFF1849 0.82 -1.4
Or see this region's nucleotide sequence