Strain Fitness in Xanthobacter sp. DMC5 around GFF181

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF180 and GFF181 overlap by 1 nucleotidesGFF181 and GFF182 are separated by 10 nucleotides GFF180 - hypothetical protein, at 188,493 to 189,674 GFF180 GFF181 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 189,674 to 190,501 GFF181 GFF182 - Long-chain-fatty-acid--CoA ligase FadD15, at 190,512 to 192,317 GFF182 Position (kb) 189 190 191Strain fitness (log2 ratio) -2 -1 0 1at 188.727 kb on + strand, within GFF180at 188.728 kb on - strand, within GFF180at 188.742 kb on + strand, within GFF180at 188.753 kb on + strand, within GFF180at 188.754 kb on - strand, within GFF180at 188.754 kb on - strand, within GFF180at 188.754 kb on - strand, within GFF180at 188.805 kb on + strand, within GFF180at 188.806 kb on - strand, within GFF180at 188.806 kb on - strand, within GFF180at 188.808 kb on + strand, within GFF180at 188.808 kb on + strand, within GFF180at 188.919 kb on + strand, within GFF180at 188.920 kb on - strand, within GFF180at 188.949 kb on + strand, within GFF180at 188.950 kb on - strand, within GFF180at 189.175 kb on + strand, within GFF180at 189.192 kb on + strand, within GFF180at 189.192 kb on + strand, within GFF180at 189.346 kb on - strand, within GFF180at 189.346 kb on - strand, within GFF180at 189.348 kb on + strand, within GFF180at 189.351 kb on + strand, within GFF180at 189.352 kb on - strand, within GFF180at 189.408 kb on + strand, within GFF180at 189.409 kb on - strand, within GFF180at 189.423 kb on + strand, within GFF180at 189.423 kb on + strand, within GFF180at 189.423 kb on + strand, within GFF180at 189.609 kb on + strandat 189.609 kb on + strandat 189.609 kb on + strandat 189.725 kb on + strandat 189.725 kb on + strandat 189.726 kb on - strandat 189.726 kb on - strandat 189.872 kb on - strand, within GFF181at 190.016 kb on + strand, within GFF181at 190.016 kb on + strand, within GFF181at 190.016 kb on + strand, within GFF181at 190.076 kb on + strand, within GFF181at 190.077 kb on - strand, within GFF181at 190.082 kb on + strand, within GFF181at 190.082 kb on + strand, within GFF181at 190.083 kb on - strand, within GFF181at 190.083 kb on - strand, within GFF181at 190.125 kb on - strand, within GFF181at 190.334 kb on + strand, within GFF181at 190.334 kb on + strand, within GFF181at 190.335 kb on - strand, within GFF181at 190.335 kb on - strand, within GFF181at 190.340 kb on + strand, within GFF181at 190.340 kb on + strand, within GFF181at 190.418 kb on + strand, within GFF181at 190.455 kb on - strandat 190.472 kb on + strandat 190.473 kb on - strandat 190.473 kb on - strandat 190.641 kb on + strandat 190.641 kb on + strandat 190.791 kb on + strand, within GFF182at 190.791 kb on + strand, within GFF182at 190.792 kb on - strand, within GFF182at 190.792 kb on - strand, within GFF182at 190.821 kb on + strand, within GFF182at 190.821 kb on + strand, within GFF182at 190.822 kb on - strand, within GFF182at 190.822 kb on - strand, within GFF182at 190.822 kb on - strand, within GFF182at 190.822 kb on - strand, within GFF182at 190.822 kb on - strand, within GFF182at 190.822 kb on - strand, within GFF182at 190.822 kb on - strand, within GFF182at 190.956 kb on + strand, within GFF182at 190.957 kb on - strand, within GFF182at 190.957 kb on - strand, within GFF182at 190.957 kb on - strand, within GFF182at 191.085 kb on + strand, within GFF182at 191.085 kb on + strand, within GFF182at 191.085 kb on + strand, within GFF182at 191.130 kb on + strand, within GFF182at 191.130 kb on + strand, within GFF182at 191.130 kb on + strand, within GFF182at 191.130 kb on + strand, within GFF182at 191.131 kb on - strand, within GFF182at 191.131 kb on - strand, within GFF182at 191.131 kb on - strand, within GFF182at 191.205 kb on + strand, within GFF182at 191.205 kb on + strand, within GFF182at 191.205 kb on + strand, within GFF182at 191.206 kb on - strand, within GFF182at 191.424 kb on + strand, within GFF182

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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188,727 + GFF180 0.20 -0.3
188,728 - GFF180 0.20 -0.5
188,742 + GFF180 0.21 -0.7
188,753 + GFF180 0.22 +0.1
188,754 - GFF180 0.22 -1.0
188,754 - GFF180 0.22 -0.7
188,754 - GFF180 0.22 -1.0
188,805 + GFF180 0.26 +0.1
188,806 - GFF180 0.26 -0.2
188,806 - GFF180 0.26 -0.3
188,808 + GFF180 0.27 +1.1
188,808 + GFF180 0.27 +1.0
188,919 + GFF180 0.36 +0.4
188,920 - GFF180 0.36 +0.5
188,949 + GFF180 0.39 -0.3
188,950 - GFF180 0.39 +1.1
189,175 + GFF180 0.58 +0.7
189,192 + GFF180 0.59 -0.2
189,192 + GFF180 0.59 -1.1
189,346 - GFF180 0.72 +0.8
189,346 - GFF180 0.72 -0.9
189,348 + GFF180 0.72 -1.1
189,351 + GFF180 0.73 +0.3
189,352 - GFF180 0.73 -1.1
189,408 + GFF180 0.77 -0.6
189,409 - GFF180 0.77 +0.5
189,423 + GFF180 0.79 +0.3
189,423 + GFF180 0.79 +0.1
189,423 + GFF180 0.79 +0.9
189,609 + +0.3
189,609 + +0.5
189,609 + -0.2
189,725 + +1.3
189,725 + +0.5
189,726 - +0.2
189,726 - -1.8
189,872 - GFF181 0.24 -0.5
190,016 + GFF181 0.41 -0.2
190,016 + GFF181 0.41 +0.8
190,016 + GFF181 0.41 +1.2
190,076 + GFF181 0.49 -0.0
190,077 - GFF181 0.49 -0.3
190,082 + GFF181 0.49 -1.3
190,082 + GFF181 0.49 -0.8
190,083 - GFF181 0.49 -0.1
190,083 - GFF181 0.49 -0.4
190,125 - GFF181 0.54 -0.2
190,334 + GFF181 0.80 -0.5
190,334 + GFF181 0.80 -0.5
190,335 - GFF181 0.80 +0.1
190,335 - GFF181 0.80 -0.3
190,340 + GFF181 0.80 -0.3
190,340 + GFF181 0.80 +0.5
190,418 + GFF181 0.90 -0.7
190,455 - -1.0
190,472 + +1.0
190,473 - -0.7
190,473 - -1.3
190,641 + -1.6
190,641 + -1.1
190,791 + GFF182 0.15 -0.9
190,791 + GFF182 0.15 -0.2
190,792 - GFF182 0.16 -0.9
190,792 - GFF182 0.16 +0.5
190,821 + GFF182 0.17 +0.5
190,821 + GFF182 0.17 +0.3
190,822 - GFF182 0.17 +0.1
190,822 - GFF182 0.17 +0.5
190,822 - GFF182 0.17 -1.1
190,822 - GFF182 0.17 +0.1
190,822 - GFF182 0.17 -0.2
190,822 - GFF182 0.17 +0.9
190,822 - GFF182 0.17 +0.5
190,956 + GFF182 0.25 -0.3
190,957 - GFF182 0.25 +0.6
190,957 - GFF182 0.25 -0.7
190,957 - GFF182 0.25 -0.2
191,085 + GFF182 0.32 +0.3
191,085 + GFF182 0.32 -0.1
191,085 + GFF182 0.32 -0.4
191,130 + GFF182 0.34 +0.5
191,130 + GFF182 0.34 +0.0
191,130 + GFF182 0.34 +0.7
191,130 + GFF182 0.34 +0.9
191,131 - GFF182 0.34 +0.0
191,131 - GFF182 0.34 +0.5
191,131 - GFF182 0.34 +0.3
191,205 + GFF182 0.38 -0.1
191,205 + GFF182 0.38 -1.1
191,205 + GFF182 0.38 -0.2
191,206 - GFF182 0.38 -0.1
191,424 + GFF182 0.50 -0.8

Or see this region's nucleotide sequence