Strain Fitness in Xanthobacter sp. DMC5 around GFF1806

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1805 and GFF1806 are separated by 226 nucleotidesGFF1806 and GFF1807 are separated by 151 nucleotides GFF1805 - N-carbamoyl-L-amino acid hydrolase, at 458,172 to 459,440 GFF1805 GFF1806 - 33 kDa chaperonin, at 459,667 to 460,674 GFF1806 GFF1807 - Ornithine carbamoyltransferase, anabolic, at 460,826 to 461,758 GFF1807 Position (kb) 459 460 461Strain fitness (log2 ratio) -1 0 1at 459.540 kb on + strandat 459.541 kb on - strandat 459.624 kb on - strandat 459.660 kb on + strandat 459.661 kb on - strandat 459.661 kb on - strandat 459.891 kb on - strand, within GFF1806at 460.181 kb on + strand, within GFF1806at 460.350 kb on - strand, within GFF1806at 460.772 kb on - strandat 460.772 kb on - strandat 460.772 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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459,540 + -1.7
459,541 - +0.2
459,624 - +0.0
459,660 + +0.3
459,661 - -0.1
459,661 - -0.3
459,891 - GFF1806 0.22 -1.1
460,181 + GFF1806 0.51 +0.1
460,350 - GFF1806 0.68 -0.3
460,772 - +0.6
460,772 - +0.6
460,772 - -0.7

Or see this region's nucleotide sequence