Strain Fitness in Xanthobacter sp. DMC5 around GFF179

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF177 and GFF178 overlap by 1 nucleotidesGFF178 and GFF179 overlap by 1 nucleotidesGFF179 and GFF180 are separated by 43 nucleotides GFF177 - Lipopolysaccharide export system ATP-binding protein LptB, at 185,674 to 186,528 GFF177 GFF178 - High-affinity branched-chain amino acid transport system permease protein LivH, at 186,528 to 187,406 GFF178 GFF179 - hypothetical protein, at 187,406 to 188,449 GFF179 GFF180 - hypothetical protein, at 188,493 to 189,674 GFF180 Position (kb) 187 188 189Strain fitness (log2 ratio) -1 0 1at 186.464 kb on - strandat 186.464 kb on - strandat 186.464 kb on - strandat 186.464 kb on - strandat 186.464 kb on - strandat 186.619 kb on - strand, within GFF178at 186.658 kb on + strand, within GFF178at 186.658 kb on + strand, within GFF178at 186.659 kb on - strand, within GFF178at 186.939 kb on + strand, within GFF178at 186.939 kb on + strand, within GFF178at 186.939 kb on + strand, within GFF178at 186.939 kb on + strand, within GFF178at 186.939 kb on + strand, within GFF178at 186.940 kb on - strand, within GFF178at 186.940 kb on - strand, within GFF178at 186.940 kb on - strand, within GFF178at 186.940 kb on - strand, within GFF178at 186.940 kb on - strand, within GFF178at 187.068 kb on + strand, within GFF178at 187.069 kb on - strand, within GFF178at 187.101 kb on + strand, within GFF178at 187.314 kb on + strand, within GFF178at 187.315 kb on - strand, within GFF178at 187.315 kb on - strand, within GFF178at 187.335 kb on + strandat 187.433 kb on + strandat 187.433 kb on + strandat 187.542 kb on - strand, within GFF179at 187.542 kb on - strand, within GFF179at 187.605 kb on - strand, within GFF179at 187.605 kb on - strand, within GFF179at 187.606 kb on + strand, within GFF179at 187.607 kb on - strand, within GFF179at 187.656 kb on - strand, within GFF179at 187.657 kb on + strand, within GFF179at 187.658 kb on - strand, within GFF179at 187.658 kb on - strand, within GFF179at 187.658 kb on - strand, within GFF179at 187.705 kb on + strand, within GFF179at 187.705 kb on + strand, within GFF179at 187.706 kb on - strand, within GFF179at 187.743 kb on + strand, within GFF179at 187.743 kb on + strand, within GFF179at 187.744 kb on - strand, within GFF179at 187.744 kb on - strand, within GFF179at 187.744 kb on - strand, within GFF179at 187.744 kb on - strand, within GFF179at 187.781 kb on + strand, within GFF179at 187.782 kb on - strand, within GFF179at 187.926 kb on - strand, within GFF179at 188.027 kb on - strand, within GFF179at 188.063 kb on + strand, within GFF179at 188.127 kb on - strand, within GFF179at 188.127 kb on - strand, within GFF179at 188.178 kb on - strand, within GFF179at 188.274 kb on - strand, within GFF179at 188.274 kb on - strand, within GFF179at 188.373 kb on + strandat 188.374 kb on - strandat 188.670 kb on + strand, within GFF180at 188.670 kb on + strand, within GFF180at 188.670 kb on + strand, within GFF180at 188.670 kb on + strand, within GFF180at 188.671 kb on - strand, within GFF180at 188.671 kb on - strand, within GFF180at 188.727 kb on + strand, within GFF180at 188.728 kb on - strand, within GFF180at 188.742 kb on + strand, within GFF180at 188.753 kb on + strand, within GFF180at 188.754 kb on - strand, within GFF180at 188.754 kb on - strand, within GFF180at 188.754 kb on - strand, within GFF180at 188.805 kb on + strand, within GFF180at 188.806 kb on - strand, within GFF180at 188.806 kb on - strand, within GFF180at 188.808 kb on + strand, within GFF180at 188.808 kb on + strand, within GFF180at 188.919 kb on + strand, within GFF180at 188.920 kb on - strand, within GFF180at 188.949 kb on + strand, within GFF180at 188.950 kb on - strand, within GFF180at 189.175 kb on + strand, within GFF180at 189.192 kb on + strand, within GFF180at 189.192 kb on + strand, within GFF180at 189.346 kb on - strand, within GFF180at 189.346 kb on - strand, within GFF180at 189.348 kb on + strand, within GFF180at 189.351 kb on + strand, within GFF180at 189.352 kb on - strand, within GFF180at 189.408 kb on + strand, within GFF180at 189.409 kb on - strand, within GFF180at 189.423 kb on + strand, within GFF180at 189.423 kb on + strand, within GFF180at 189.423 kb on + strand, within GFF180

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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186,464 - -0.5
186,464 - -0.7
186,464 - -1.0
186,464 - -0.3
186,464 - -0.7
186,619 - GFF178 0.10 +1.0
186,658 + GFF178 0.15 +0.4
186,658 + GFF178 0.15 -0.6
186,659 - GFF178 0.15 -1.6
186,939 + GFF178 0.47 +0.1
186,939 + GFF178 0.47 -1.1
186,939 + GFF178 0.47 -0.3
186,939 + GFF178 0.47 -0.9
186,939 + GFF178 0.47 -0.3
186,940 - GFF178 0.47 +0.1
186,940 - GFF178 0.47 +0.1
186,940 - GFF178 0.47 -0.4
186,940 - GFF178 0.47 +0.0
186,940 - GFF178 0.47 -0.4
187,068 + GFF178 0.61 -0.6
187,069 - GFF178 0.62 -0.5
187,101 + GFF178 0.65 +0.6
187,314 + GFF178 0.89 -0.4
187,315 - GFF178 0.90 -0.7
187,315 - GFF178 0.90 +0.6
187,335 + +0.8
187,433 + -0.2
187,433 + -0.4
187,542 - GFF179 0.13 -0.6
187,542 - GFF179 0.13 -0.9
187,605 - GFF179 0.19 +0.9
187,605 - GFF179 0.19 +1.1
187,606 + GFF179 0.19 +0.4
187,607 - GFF179 0.19 +0.2
187,656 - GFF179 0.24 -0.5
187,657 + GFF179 0.24 +0.1
187,658 - GFF179 0.24 +0.1
187,658 - GFF179 0.24 +1.7
187,658 - GFF179 0.24 +1.1
187,705 + GFF179 0.29 -1.2
187,705 + GFF179 0.29 -0.6
187,706 - GFF179 0.29 -0.4
187,743 + GFF179 0.32 +1.1
187,743 + GFF179 0.32 +0.5
187,744 - GFF179 0.32 -0.1
187,744 - GFF179 0.32 +0.3
187,744 - GFF179 0.32 +1.0
187,744 - GFF179 0.32 -0.8
187,781 + GFF179 0.36 +0.1
187,782 - GFF179 0.36 -0.2
187,926 - GFF179 0.50 +1.6
188,027 - GFF179 0.59 +0.3
188,063 + GFF179 0.63 -1.3
188,127 - GFF179 0.69 -0.1
188,127 - GFF179 0.69 +0.2
188,178 - GFF179 0.74 +1.0
188,274 - GFF179 0.83 +0.1
188,274 - GFF179 0.83 -0.3
188,373 + +0.2
188,374 - +1.0
188,670 + GFF180 0.15 +0.1
188,670 + GFF180 0.15 -1.1
188,670 + GFF180 0.15 +1.3
188,670 + GFF180 0.15 -0.1
188,671 - GFF180 0.15 +0.8
188,671 - GFF180 0.15 -0.4
188,727 + GFF180 0.20 -0.3
188,728 - GFF180 0.20 -0.5
188,742 + GFF180 0.21 -0.7
188,753 + GFF180 0.22 +0.1
188,754 - GFF180 0.22 -1.0
188,754 - GFF180 0.22 -0.7
188,754 - GFF180 0.22 -1.0
188,805 + GFF180 0.26 +0.1
188,806 - GFF180 0.26 -0.2
188,806 - GFF180 0.26 -0.3
188,808 + GFF180 0.27 +1.1
188,808 + GFF180 0.27 +1.0
188,919 + GFF180 0.36 +0.4
188,920 - GFF180 0.36 +0.5
188,949 + GFF180 0.39 -0.3
188,950 - GFF180 0.39 +1.1
189,175 + GFF180 0.58 +0.7
189,192 + GFF180 0.59 -0.2
189,192 + GFF180 0.59 -1.1
189,346 - GFF180 0.72 +0.8
189,346 - GFF180 0.72 -0.9
189,348 + GFF180 0.72 -1.1
189,351 + GFF180 0.73 +0.3
189,352 - GFF180 0.73 -1.1
189,408 + GFF180 0.77 -0.6
189,409 - GFF180 0.77 +0.5
189,423 + GFF180 0.79 +0.3
189,423 + GFF180 0.79 +0.1
189,423 + GFF180 0.79 +0.9

Or see this region's nucleotide sequence