Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1763 and GFF1764 overlap by 4 nucleotides GFF1764 and GFF1765 are separated by 3 nucleotides GFF1765 and GFF1766 overlap by 4 nucleotides GFF1766 and GFF1767 are separated by 131 nucleotides
GFF1763 - D-inositol-3-phosphate glycosyltransferase, at 414,201 to 415,259
GFF1763
GFF1764 - hypothetical protein, at 415,256 to 416,122
GFF1764
GFF1765 - hypothetical protein, at 416,126 to 417,049
GFF1765
GFF1766 - hypothetical protein, at 417,046 to 417,405
GFF1766
GFF1767 - Signal recognition particle receptor FtsY, at 417,537 to 418,853
GFF1767
Position (kb) 416
417
418 Strain fitness (log2 ratio) -2
-1
0
1
2 at 415.426 kb on + strand, within GFF1764 at 415.473 kb on + strand, within GFF1764 at 415.679 kb on + strand, within GFF1764 at 415.680 kb on - strand, within GFF1764 at 415.917 kb on - strand, within GFF1764 at 416.355 kb on + strand, within GFF1765 at 416.412 kb on + strand, within GFF1765 at 416.548 kb on + strand, within GFF1765 at 416.549 kb on - strand, within GFF1765 at 416.663 kb on + strand, within GFF1765 at 416.663 kb on + strand, within GFF1765 at 416.663 kb on + strand, within GFF1765 at 417.080 kb on + strand at 417.080 kb on + strand at 417.516 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 415,426 + GFF1764 0.20 -2.2 415,473 + GFF1764 0.25 -1.4 415,679 + GFF1764 0.49 -0.1 415,680 - GFF1764 0.49 +0.5 415,917 - GFF1764 0.76 +0.6 416,355 + GFF1765 0.25 -0.1 416,412 + GFF1765 0.31 -0.9 416,548 + GFF1765 0.46 -0.1 416,549 - GFF1765 0.46 -0.9 416,663 + GFF1765 0.58 -0.3 416,663 + GFF1765 0.58 +0.7 416,663 + GFF1765 0.58 +1.6 417,080 + -0.0 417,080 + +0.1 417,516 - +2.0
Or see this region's nucleotide sequence