Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1746 and GFF1747 are separated by 90 nucleotides GFF1747 and GFF1748 are separated by 127 nucleotides GFF1748 and GFF1749 are separated by 180 nucleotides
GFF1746 - Aldo-keto reductase IolS, at 395,078 to 396,064
GFF1746
GFF1747 - hypothetical protein, at 396,155 to 396,814
GFF1747
GFF1748 - Nucleoside diphosphate kinase, at 396,942 to 397,364
GFF1748
GFF1749 - hypothetical protein, at 397,545 to 398,252
GFF1749
Position (kb) 396
397 Strain fitness (log2 ratio) -1
0
1 at 395.536 kb on - strand, within GFF1746 at 395.538 kb on + strand, within GFF1746 at 395.700 kb on + strand, within GFF1746 at 395.701 kb on - strand, within GFF1746 at 395.701 kb on - strand, within GFF1746 at 395.701 kb on - strand, within GFF1746 at 395.703 kb on + strand, within GFF1746 at 395.716 kb on + strand, within GFF1746 at 395.717 kb on - strand, within GFF1746 at 395.763 kb on + strand, within GFF1746 at 395.763 kb on + strand, within GFF1746 at 395.898 kb on + strand, within GFF1746 at 395.898 kb on + strand, within GFF1746 at 395.899 kb on - strand, within GFF1746 at 395.899 kb on - strand, within GFF1746 at 395.899 kb on - strand, within GFF1746 at 395.949 kb on - strand, within GFF1746 at 395.967 kb on + strand at 395.998 kb on + strand at 395.998 kb on + strand at 395.999 kb on - strand at 395.999 kb on - strand at 395.999 kb on - strand at 396.076 kb on + strand at 396.076 kb on + strand at 396.076 kb on + strand at 396.299 kb on + strand, within GFF1747 at 396.486 kb on - strand, within GFF1747 at 396.588 kb on - strand, within GFF1747 at 396.837 kb on - strand at 397.454 kb on - strand at 397.477 kb on - strand at 397.606 kb on + strand at 397.606 kb on + strand at 397.606 kb on + strand at 397.606 kb on + strand at 397.607 kb on - strand at 397.607 kb on - strand at 397.802 kb on - strand, within GFF1749
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 395,536 - GFF1746 0.46 -0.3 395,538 + GFF1746 0.47 -0.3 395,700 + GFF1746 0.63 +1.2 395,701 - GFF1746 0.63 +1.2 395,701 - GFF1746 0.63 -1.6 395,701 - GFF1746 0.63 +1.3 395,703 + GFF1746 0.63 +0.5 395,716 + GFF1746 0.65 -0.9 395,717 - GFF1746 0.65 -0.4 395,763 + GFF1746 0.69 +0.3 395,763 + GFF1746 0.69 +1.0 395,898 + GFF1746 0.83 -0.0 395,898 + GFF1746 0.83 +0.2 395,899 - GFF1746 0.83 -0.3 395,899 - GFF1746 0.83 -0.1 395,899 - GFF1746 0.83 +1.7 395,949 - GFF1746 0.88 +0.1 395,967 + -1.6 395,998 + +1.3 395,998 + -0.4 395,999 - -0.6 395,999 - +1.3 395,999 - +0.4 396,076 + +0.3 396,076 + -0.8 396,076 + +0.3 396,299 + GFF1747 0.22 -1.0 396,486 - GFF1747 0.50 -0.5 396,588 - GFF1747 0.66 -0.4 396,837 - -0.1 397,454 - -0.5 397,477 - -0.3 397,606 + -1.4 397,606 + +0.1 397,606 + -0.7 397,606 + -0.9 397,607 - -0.7 397,607 - +0.4 397,802 - GFF1749 0.36 -1.4
Or see this region's nucleotide sequence