Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1740 and GFF1741 are separated by 287 nucleotides GFF1741 and GFF1742 overlap by 8 nucleotides GFF1742 and GFF1743 overlap by 1 nucleotides
GFF1740 - Gamma-glutamylputrescine synthetase PuuA, at 388,537 to 389,940
GFF1740
GFF1741 - Adaptive-response sensory-kinase SasA, at 390,228 to 391,745
GFF1741
GFF1742 - Response regulator rcp1, at 391,738 to 392,175
GFF1742
GFF1743 - Sensor histidine kinase RcsC, at 392,175 to 393,296
GFF1743
Position (kb) 390
391
392 Strain fitness (log2 ratio) -2
-1
0
1 at 389.240 kb on + strand, within GFF1740 at 389.370 kb on - strand, within GFF1740 at 389.370 kb on - strand, within GFF1740 at 389.370 kb on - strand, within GFF1740 at 389.370 kb on - strand, within GFF1740 at 389.370 kb on - strand, within GFF1740 at 389.370 kb on - strand, within GFF1740 at 389.832 kb on - strand at 389.852 kb on + strand at 389.853 kb on - strand at 389.864 kb on + strand at 389.865 kb on - strand at 389.943 kb on + strand at 389.944 kb on - strand at 389.944 kb on - strand at 389.944 kb on - strand at 390.019 kb on + strand at 390.019 kb on + strand at 390.019 kb on + strand at 390.019 kb on + strand at 390.020 kb on - strand at 390.505 kb on - strand, within GFF1741 at 390.505 kb on - strand, within GFF1741 at 390.630 kb on + strand, within GFF1741 at 390.630 kb on + strand, within GFF1741 at 391.008 kb on + strand, within GFF1741 at 391.008 kb on + strand, within GFF1741 at 391.008 kb on + strand, within GFF1741 at 391.009 kb on - strand, within GFF1741 at 391.434 kb on + strand, within GFF1741 at 391.637 kb on + strand at 391.638 kb on - strand at 392.060 kb on - strand, within GFF1742 at 392.081 kb on - strand, within GFF1742 at 392.081 kb on - strand, within GFF1742 at 392.253 kb on + strand at 392.253 kb on + strand at 392.253 kb on + strand at 392.253 kb on + strand at 392.253 kb on + strand at 392.253 kb on + strand at 392.397 kb on + strand, within GFF1743 at 392.397 kb on + strand, within GFF1743 at 392.397 kb on + strand, within GFF1743 at 392.398 kb on - strand, within GFF1743 at 392.469 kb on + strand, within GFF1743 at 392.469 kb on + strand, within GFF1743 at 392.469 kb on + strand, within GFF1743 at 392.469 kb on + strand, within GFF1743 at 392.470 kb on - strand, within GFF1743 at 392.470 kb on - strand, within GFF1743 at 392.470 kb on - strand, within GFF1743 at 392.470 kb on - strand, within GFF1743 at 392.470 kb on - strand, within GFF1743 at 392.532 kb on + strand, within GFF1743 at 392.587 kb on + strand, within GFF1743 at 392.588 kb on - strand, within GFF1743
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 389,240 + GFF1740 0.50 -0.9 389,370 - GFF1740 0.59 +0.7 389,370 - GFF1740 0.59 +0.2 389,370 - GFF1740 0.59 +0.9 389,370 - GFF1740 0.59 +0.5 389,370 - GFF1740 0.59 +1.2 389,370 - GFF1740 0.59 -1.6 389,832 - -0.3 389,852 + -0.4 389,853 - -0.2 389,864 + -0.5 389,865 - -1.9 389,943 + +0.7 389,944 - -0.1 389,944 - +0.5 389,944 - +0.2 390,019 + +0.0 390,019 + +0.9 390,019 + +0.9 390,019 + -0.8 390,020 - +1.3 390,505 - GFF1741 0.18 +0.6 390,505 - GFF1741 0.18 +0.0 390,630 + GFF1741 0.26 -0.1 390,630 + GFF1741 0.26 -1.4 391,008 + GFF1741 0.51 -0.9 391,008 + GFF1741 0.51 -1.2 391,008 + GFF1741 0.51 +0.5 391,009 - GFF1741 0.51 +0.7 391,434 + GFF1741 0.79 -1.2 391,637 + -0.3 391,638 - -0.7 392,060 - GFF1742 0.74 +1.0 392,081 - GFF1742 0.78 +1.1 392,081 - GFF1742 0.78 -0.1 392,253 + +1.1 392,253 + -0.4 392,253 + -0.0 392,253 + -0.3 392,253 + +0.3 392,253 + +0.2 392,397 + GFF1743 0.20 -0.7 392,397 + GFF1743 0.20 +0.8 392,397 + GFF1743 0.20 -0.2 392,398 - GFF1743 0.20 +0.4 392,469 + GFF1743 0.26 -0.6 392,469 + GFF1743 0.26 -0.3 392,469 + GFF1743 0.26 -0.5 392,469 + GFF1743 0.26 -0.6 392,470 - GFF1743 0.26 +0.8 392,470 - GFF1743 0.26 +0.2 392,470 - GFF1743 0.26 +0.4 392,470 - GFF1743 0.26 +0.4 392,470 - GFF1743 0.26 +0.6 392,532 + GFF1743 0.32 +0.4 392,587 + GFF1743 0.37 +1.2 392,588 - GFF1743 0.37 -0.1
Or see this region's nucleotide sequence