Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1709 and GFF1710 are separated by 226 nucleotides GFF1710 and GFF1711 are separated by 6 nucleotides GFF1711 and GFF1712 are separated by 167 nucleotides
GFF1709 - 4-hydroxyphenylacetate 3-monooxygenase oxygenase component, at 357,225 to 358,679
GFF1709
GFF1710 - hypothetical protein, at 358,906 to 359,844
GFF1710
GFF1711 - hypothetical protein, at 359,851 to 360,339
GFF1711
GFF1712 - hypothetical protein, at 360,507 to 360,941
GFF1712
Position (kb) 358
359
360 Strain fitness (log2 ratio) -2
-1
0
1
2 at 357.926 kb on + strand, within GFF1709 at 357.926 kb on + strand, within GFF1709 at 357.926 kb on + strand, within GFF1709 at 357.927 kb on - strand, within GFF1709 at 357.958 kb on + strand, within GFF1709 at 357.958 kb on + strand, within GFF1709 at 357.959 kb on - strand, within GFF1709 at 358.096 kb on + strand, within GFF1709 at 358.096 kb on + strand, within GFF1709 at 358.097 kb on - strand, within GFF1709 at 358.097 kb on - strand, within GFF1709 at 358.129 kb on + strand, within GFF1709 at 358.130 kb on - strand, within GFF1709 at 358.504 kb on + strand, within GFF1709 at 358.504 kb on + strand, within GFF1709 at 358.505 kb on - strand, within GFF1709 at 358.505 kb on - strand, within GFF1709 at 358.505 kb on - strand, within GFF1709 at 358.505 kb on - strand, within GFF1709 at 358.505 kb on - strand, within GFF1709 at 358.547 kb on - strand at 358.547 kb on - strand at 358.547 kb on - strand at 358.658 kb on - strand at 358.745 kb on + strand at 358.877 kb on + strand at 358.933 kb on + strand at 358.933 kb on + strand at 358.933 kb on + strand at 358.933 kb on + strand at 358.934 kb on - strand at 358.934 kb on - strand at 358.934 kb on - strand at 359.104 kb on + strand, within GFF1710 at 359.104 kb on + strand, within GFF1710 at 359.104 kb on + strand, within GFF1710 at 359.105 kb on - strand, within GFF1710 at 359.105 kb on - strand, within GFF1710 at 359.105 kb on - strand, within GFF1710 at 359.353 kb on + strand, within GFF1710 at 359.353 kb on + strand, within GFF1710 at 359.354 kb on - strand, within GFF1710 at 359.354 kb on - strand, within GFF1710 at 359.354 kb on - strand, within GFF1710 at 359.354 kb on - strand, within GFF1710 at 359.494 kb on + strand, within GFF1710 at 359.518 kb on + strand, within GFF1710 at 359.581 kb on + strand, within GFF1710 at 359.659 kb on + strand, within GFF1710 at 359.659 kb on + strand, within GFF1710 at 359.660 kb on - strand, within GFF1710 at 359.842 kb on + strand at 359.842 kb on + strand at 360.147 kb on - strand, within GFF1711 at 360.149 kb on + strand, within GFF1711 at 360.150 kb on - strand, within GFF1711 at 360.150 kb on - strand, within GFF1711 at 360.150 kb on - strand, within GFF1711 at 360.470 kb on - strand at 360.470 kb on - strand at 360.470 kb on - strand at 360.471 kb on + strand at 360.471 kb on + strand at 360.472 kb on - strand at 360.472 kb on - strand at 360.844 kb on - strand, within GFF1712 at 360.844 kb on - strand, within GFF1712
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 357,926 + GFF1709 0.48 +0.1 357,926 + GFF1709 0.48 +0.8 357,926 + GFF1709 0.48 +1.3 357,927 - GFF1709 0.48 +0.5 357,958 + GFF1709 0.50 +0.5 357,958 + GFF1709 0.50 +0.7 357,959 - GFF1709 0.50 +0.6 358,096 + GFF1709 0.60 -2.2 358,096 + GFF1709 0.60 +1.2 358,097 - GFF1709 0.60 -1.0 358,097 - GFF1709 0.60 -1.8 358,129 + GFF1709 0.62 -1.9 358,130 - GFF1709 0.62 -1.7 358,504 + GFF1709 0.88 +0.1 358,504 + GFF1709 0.88 -0.7 358,505 - GFF1709 0.88 -0.2 358,505 - GFF1709 0.88 -0.9 358,505 - GFF1709 0.88 +0.3 358,505 - GFF1709 0.88 -0.3 358,505 - GFF1709 0.88 +0.4 358,547 - -0.5 358,547 - -0.4 358,547 - +0.6 358,658 - +0.0 358,745 + +0.9 358,877 + +0.5 358,933 + -0.5 358,933 + +0.7 358,933 + +0.2 358,933 + -0.3 358,934 - -0.1 358,934 - -1.0 358,934 - -0.5 359,104 + GFF1710 0.21 -0.2 359,104 + GFF1710 0.21 -1.5 359,104 + GFF1710 0.21 -1.1 359,105 - GFF1710 0.21 +0.6 359,105 - GFF1710 0.21 +0.6 359,105 - GFF1710 0.21 +0.6 359,353 + GFF1710 0.48 -1.1 359,353 + GFF1710 0.48 -1.9 359,354 - GFF1710 0.48 +0.2 359,354 - GFF1710 0.48 -0.0 359,354 - GFF1710 0.48 +0.1 359,354 - GFF1710 0.48 +0.6 359,494 + GFF1710 0.63 -0.1 359,518 + GFF1710 0.65 -0.4 359,581 + GFF1710 0.72 -0.0 359,659 + GFF1710 0.80 -0.9 359,659 + GFF1710 0.80 +1.3 359,660 - GFF1710 0.80 -0.0 359,842 + -0.3 359,842 + -0.6 360,147 - GFF1711 0.61 +0.4 360,149 + GFF1711 0.61 +2.0 360,150 - GFF1711 0.61 -0.3 360,150 - GFF1711 0.61 -1.6 360,150 - GFF1711 0.61 +0.2 360,470 - +0.4 360,470 - +0.1 360,470 - +1.8 360,471 + -0.1 360,471 + +0.3 360,472 - -0.6 360,472 - +0.0 360,844 - GFF1712 0.77 -0.6 360,844 - GFF1712 0.77 +2.0
Or see this region's nucleotide sequence