Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1692 and GFF1693 are separated by 147 nucleotides GFF1693 and GFF1694 are separated by 277 nucleotides GFF1694 and GFF1695 are separated by 134 nucleotides
GFF1692 - putative GTPase, at 342,675 to 343,652
GFF1692
GFF1693 - hypothetical protein, at 343,800 to 344,132
GFF1693
GFF1694 - Sulfurtransferase, at 344,410 to 344,751
GFF1694
GFF1695 - 3-isopropylmalate dehydrogenase, at 344,886 to 345,998
GFF1695
Position (kb) 343
344
345 Strain fitness (log2 ratio) -2
-1
0
1 at 343.022 kb on + strand, within GFF1692 at 343.192 kb on + strand, within GFF1692 at 343.193 kb on - strand, within GFF1692 at 343.193 kb on - strand, within GFF1692 at 343.193 kb on - strand, within GFF1692 at 343.193 kb on - strand, within GFF1692 at 343.663 kb on + strand at 343.882 kb on + strand, within GFF1693 at 343.882 kb on + strand, within GFF1693 at 343.883 kb on - strand, within GFF1693 at 343.883 kb on - strand, within GFF1693 at 344.037 kb on - strand, within GFF1693 at 344.037 kb on - strand, within GFF1693 at 344.683 kb on + strand, within GFF1694 at 344.683 kb on + strand, within GFF1694 at 344.684 kb on - strand, within GFF1694 at 344.821 kb on + strand at 344.821 kb on + strand at 344.822 kb on - strand at 344.822 kb on - strand at 344.822 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 343,022 + GFF1692 0.35 +0.6 343,192 + GFF1692 0.53 -0.2 343,193 - GFF1692 0.53 -0.1 343,193 - GFF1692 0.53 +0.8 343,193 - GFF1692 0.53 +0.9 343,193 - GFF1692 0.53 -1.3 343,663 + -0.0 343,882 + GFF1693 0.25 -0.5 343,882 + GFF1693 0.25 +1.3 343,883 - GFF1693 0.25 -0.7 343,883 - GFF1693 0.25 -1.0 344,037 - GFF1693 0.71 -0.3 344,037 - GFF1693 0.71 +1.0 344,683 + GFF1694 0.80 -0.4 344,683 + GFF1694 0.80 -0.9 344,684 - GFF1694 0.80 -0.5 344,821 + -0.5 344,821 + -0.4 344,822 - -1.9 344,822 - -0.8 344,822 - -0.3
Or see this region's nucleotide sequence