Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1678 and GFF1679 are separated by 9 nucleotides GFF1679 and GFF1680 are separated by 471 nucleotides GFF1680 and GFF1681 are separated by 66 nucleotides
GFF1678 - Ribosome-binding ATPase YchF, at 332,022 to 333,119
GFF1678
GFF1679 - hypothetical protein, at 333,129 to 333,602
GFF1679
GFF1680 - hypothetical protein, at 334,074 to 334,406
GFF1680
GFF1681 - hypothetical protein, at 334,473 to 334,784
GFF1681
Position (kb) 333
334 Strain fitness (log2 ratio) -2
-1
0
1 at 332.635 kb on - strand, within GFF1678 at 332.677 kb on - strand, within GFF1678 at 332.872 kb on - strand, within GFF1678 at 333.006 kb on + strand, within GFF1678 at 333.072 kb on + strand at 333.152 kb on - strand at 333.501 kb on + strand, within GFF1679 at 333.501 kb on + strand, within GFF1679 at 333.501 kb on + strand, within GFF1679 at 333.502 kb on - strand, within GFF1679 at 333.502 kb on - strand, within GFF1679 at 333.502 kb on - strand, within GFF1679 at 333.502 kb on - strand, within GFF1679 at 333.502 kb on - strand, within GFF1679 at 333.502 kb on - strand, within GFF1679 at 333.611 kb on - strand at 333.782 kb on + strand at 333.803 kb on - strand at 333.965 kb on + strand at 333.965 kb on + strand at 333.966 kb on - strand at 334.016 kb on + strand at 334.071 kb on - strand at 334.086 kb on - strand at 334.143 kb on + strand, within GFF1680 at 334.256 kb on - strand, within GFF1680 at 334.256 kb on - strand, within GFF1680 at 334.285 kb on - strand, within GFF1680 at 334.297 kb on - strand, within GFF1680 at 334.297 kb on - strand, within GFF1680 at 334.324 kb on - strand, within GFF1680 at 334.405 kb on - strand at 334.418 kb on - strand at 334.418 kb on - strand at 334.470 kb on - strand at 334.471 kb on + strand at 334.526 kb on + strand, within GFF1681 at 334.574 kb on - strand, within GFF1681
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 332,635 - GFF1678 0.56 +0.3 332,677 - GFF1678 0.60 +0.3 332,872 - GFF1678 0.77 -0.5 333,006 + GFF1678 0.90 -0.0 333,072 + -0.0 333,152 - +0.7 333,501 + GFF1679 0.78 +0.4 333,501 + GFF1679 0.78 -0.2 333,501 + GFF1679 0.78 +0.5 333,502 - GFF1679 0.79 -0.4 333,502 - GFF1679 0.79 -1.2 333,502 - GFF1679 0.79 -0.6 333,502 - GFF1679 0.79 -0.2 333,502 - GFF1679 0.79 -1.1 333,502 - GFF1679 0.79 +0.9 333,611 - +0.2 333,782 + +0.3 333,803 - -0.1 333,965 + -1.0 333,965 + -0.2 333,966 - +0.3 334,016 + -0.8 334,071 - +1.6 334,086 - -0.2 334,143 + GFF1680 0.21 +0.4 334,256 - GFF1680 0.55 +0.2 334,256 - GFF1680 0.55 -0.8 334,285 - GFF1680 0.63 +0.7 334,297 - GFF1680 0.67 -0.2 334,297 - GFF1680 0.67 -1.9 334,324 - GFF1680 0.75 -0.5 334,405 - +0.4 334,418 - -1.0 334,418 - +0.9 334,470 - +0.9 334,471 + +0.4 334,526 + GFF1681 0.17 -0.6 334,574 - GFF1681 0.32 +0.5
Or see this region's nucleotide sequence