Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1662 and GFF1663 are separated by 81 nucleotides GFF1663 and GFF1664 are separated by 44 nucleotides GFF1664 and GFF1665 are separated by 5 nucleotides
GFF1662 - hypothetical protein, at 317,326 to 318,579
GFF1662
GFF1663 - Cyanate hydratase, at 318,661 to 319,149
GFF1663
GFF1664 - Bicarbonate transport ATP-binding protein CmpD, at 319,194 to 320,123
GFF1664
GFF1665 - Nitrate import permease protein NrtB, at 320,129 to 320,968
GFF1665
Position (kb) 318
319
320 Strain fitness (log2 ratio) -2
-1
0
1
2 at 317.680 kb on + strand, within GFF1662 at 317.680 kb on + strand, within GFF1662 at 317.681 kb on - strand, within GFF1662 at 317.701 kb on + strand, within GFF1662 at 317.702 kb on - strand, within GFF1662 at 317.879 kb on - strand, within GFF1662 at 318.577 kb on + strand at 318.577 kb on + strand at 318.577 kb on + strand at 318.681 kb on - strand at 318.707 kb on + strand at 318.710 kb on + strand, within GFF1663 at 318.711 kb on - strand, within GFF1663 at 318.711 kb on - strand, within GFF1663 at 318.711 kb on - strand, within GFF1663 at 318.785 kb on + strand, within GFF1663 at 318.879 kb on - strand, within GFF1663 at 318.888 kb on - strand, within GFF1663 at 318.888 kb on - strand, within GFF1663 at 319.082 kb on + strand, within GFF1663 at 319.082 kb on + strand, within GFF1663 at 319.082 kb on + strand, within GFF1663 at 319.082 kb on + strand, within GFF1663 at 319.083 kb on - strand, within GFF1663 at 319.083 kb on - strand, within GFF1663 at 319.083 kb on - strand, within GFF1663 at 319.083 kb on - strand, within GFF1663 at 319.083 kb on - strand, within GFF1663 at 319.294 kb on + strand, within GFF1664 at 319.370 kb on - strand, within GFF1664 at 319.372 kb on + strand, within GFF1664 at 319.372 kb on + strand, within GFF1664 at 319.372 kb on + strand, within GFF1664 at 319.373 kb on - strand, within GFF1664 at 319.373 kb on - strand, within GFF1664 at 319.373 kb on - strand, within GFF1664 at 319.489 kb on + strand, within GFF1664 at 319.489 kb on + strand, within GFF1664 at 319.490 kb on - strand, within GFF1664 at 319.490 kb on - strand, within GFF1664 at 319.799 kb on - strand, within GFF1664 at 320.060 kb on - strand at 320.098 kb on + strand at 320.099 kb on - strand at 320.099 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 317,680 + GFF1662 0.28 -0.5 317,680 + GFF1662 0.28 -0.6 317,681 - GFF1662 0.28 +0.5 317,701 + GFF1662 0.30 -2.4 317,702 - GFF1662 0.30 -0.0 317,879 - GFF1662 0.44 -0.1 318,577 + -0.1 318,577 + -0.1 318,577 + -0.9 318,681 - -0.0 318,707 + +0.3 318,710 + GFF1663 0.10 -0.3 318,711 - GFF1663 0.10 +2.3 318,711 - GFF1663 0.10 +0.9 318,711 - GFF1663 0.10 +0.9 318,785 + GFF1663 0.25 -0.4 318,879 - GFF1663 0.45 -2.1 318,888 - GFF1663 0.46 -0.5 318,888 - GFF1663 0.46 -1.0 319,082 + GFF1663 0.86 -0.8 319,082 + GFF1663 0.86 +0.5 319,082 + GFF1663 0.86 -0.0 319,082 + GFF1663 0.86 -0.9 319,083 - GFF1663 0.86 +0.3 319,083 - GFF1663 0.86 +0.6 319,083 - GFF1663 0.86 -0.8 319,083 - GFF1663 0.86 -0.6 319,083 - GFF1663 0.86 +0.9 319,294 + GFF1664 0.11 +1.0 319,370 - GFF1664 0.19 -0.2 319,372 + GFF1664 0.19 -0.1 319,372 + GFF1664 0.19 -0.4 319,372 + GFF1664 0.19 -0.5 319,373 - GFF1664 0.19 -0.7 319,373 - GFF1664 0.19 +0.2 319,373 - GFF1664 0.19 -0.0 319,489 + GFF1664 0.32 +0.3 319,489 + GFF1664 0.32 -0.4 319,490 - GFF1664 0.32 +0.2 319,490 - GFF1664 0.32 +1.0 319,799 - GFF1664 0.65 -0.3 320,060 - -0.9 320,098 + +0.1 320,099 - +0.7 320,099 - -0.9
Or see this region's nucleotide sequence