Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1648 and GFF1649 are separated by 96 nucleotides GFF1649 and GFF1650 overlap by 4 nucleotides
GFF1648 - Inner membrane ABC transporter permease protein YejB, at 298,906 to 300,018
GFF1648
GFF1649 - Oligopeptide-binding protein AppA, at 300,115 to 302,016
GFF1649
GFF1650 - hypothetical protein, at 302,013 to 303,923
GFF1650
Position (kb) 300
301
302
303 Strain fitness (log2 ratio) -2
-1
0
1 at 299.231 kb on + strand, within GFF1648 at 299.232 kb on - strand, within GFF1648 at 299.679 kb on - strand, within GFF1648 at 300.052 kb on - strand at 300.058 kb on + strand at 300.059 kb on - strand at 300.059 kb on - strand at 300.095 kb on - strand at 300.095 kb on - strand at 300.095 kb on - strand at 300.216 kb on - strand at 300.383 kb on + strand, within GFF1649 at 300.383 kb on + strand, within GFF1649 at 300.383 kb on + strand, within GFF1649 at 300.383 kb on + strand, within GFF1649 at 300.384 kb on - strand, within GFF1649 at 300.384 kb on - strand, within GFF1649 at 300.384 kb on - strand, within GFF1649 at 300.459 kb on - strand, within GFF1649 at 300.552 kb on - strand, within GFF1649 at 300.669 kb on - strand, within GFF1649 at 300.669 kb on - strand, within GFF1649 at 300.750 kb on - strand, within GFF1649 at 300.750 kb on - strand, within GFF1649 at 300.750 kb on - strand, within GFF1649 at 300.849 kb on + strand, within GFF1649 at 300.875 kb on + strand, within GFF1649 at 300.875 kb on + strand, within GFF1649 at 300.875 kb on + strand, within GFF1649 at 300.876 kb on - strand, within GFF1649 at 300.884 kb on + strand, within GFF1649 at 300.884 kb on + strand, within GFF1649 at 300.884 kb on + strand, within GFF1649 at 300.884 kb on + strand, within GFF1649 at 300.884 kb on + strand, within GFF1649 at 300.884 kb on + strand, within GFF1649 at 300.885 kb on - strand, within GFF1649 at 300.885 kb on - strand, within GFF1649 at 301.106 kb on + strand, within GFF1649 at 301.107 kb on - strand, within GFF1649 at 301.155 kb on - strand, within GFF1649 at 301.160 kb on + strand, within GFF1649 at 301.161 kb on - strand, within GFF1649 at 301.218 kb on - strand, within GFF1649 at 301.218 kb on - strand, within GFF1649 at 301.235 kb on + strand, within GFF1649 at 301.236 kb on - strand, within GFF1649 at 301.236 kb on - strand, within GFF1649 at 301.242 kb on + strand, within GFF1649 at 301.242 kb on + strand, within GFF1649 at 301.244 kb on + strand, within GFF1649 at 301.244 kb on + strand, within GFF1649 at 301.244 kb on + strand, within GFF1649 at 301.244 kb on + strand, within GFF1649 at 301.245 kb on - strand, within GFF1649 at 301.245 kb on - strand, within GFF1649 at 301.245 kb on - strand, within GFF1649 at 301.245 kb on - strand, within GFF1649 at 301.465 kb on + strand, within GFF1649 at 301.465 kb on + strand, within GFF1649 at 301.465 kb on + strand, within GFF1649 at 301.466 kb on - strand, within GFF1649 at 301.475 kb on + strand, within GFF1649 at 301.574 kb on + strand, within GFF1649 at 301.622 kb on + strand, within GFF1649 at 301.622 kb on + strand, within GFF1649 at 301.622 kb on + strand, within GFF1649 at 301.622 kb on + strand, within GFF1649 at 301.622 kb on + strand, within GFF1649 at 301.623 kb on - strand, within GFF1649 at 301.666 kb on + strand, within GFF1649 at 301.667 kb on + strand, within GFF1649 at 301.667 kb on + strand, within GFF1649 at 301.668 kb on - strand, within GFF1649 at 301.668 kb on - strand, within GFF1649 at 301.668 kb on - strand, within GFF1649 at 301.668 kb on - strand, within GFF1649 at 301.668 kb on - strand, within GFF1649 at 301.748 kb on + strand, within GFF1649 at 301.748 kb on + strand, within GFF1649 at 301.748 kb on + strand, within GFF1649 at 301.748 kb on + strand, within GFF1649 at 301.749 kb on - strand, within GFF1649 at 301.749 kb on - strand, within GFF1649 at 301.752 kb on - strand, within GFF1649 at 301.808 kb on + strand, within GFF1649 at 301.809 kb on - strand, within GFF1649 at 301.809 kb on - strand, within GFF1649 at 301.809 kb on - strand, within GFF1649 at 301.835 kb on + strand at 301.836 kb on - strand at 302.142 kb on - strand at 302.144 kb on - strand at 302.240 kb on - strand, within GFF1650 at 302.240 kb on - strand, within GFF1650 at 302.240 kb on - strand, within GFF1650 at 302.393 kb on - strand, within GFF1650 at 302.420 kb on - strand, within GFF1650 at 302.483 kb on - strand, within GFF1650 at 302.581 kb on + strand, within GFF1650 at 302.663 kb on - strand, within GFF1650 at 302.663 kb on - strand, within GFF1650 at 302.837 kb on - strand, within GFF1650 at 302.837 kb on - strand, within GFF1650 at 302.837 kb on - strand, within GFF1650 at 302.837 kb on - strand, within GFF1650 at 302.975 kb on - strand, within GFF1650
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 299,231 + GFF1648 0.29 +0.3 299,232 - GFF1648 0.29 +0.3 299,679 - GFF1648 0.69 -0.3 300,052 - +0.0 300,058 + +0.5 300,059 - +0.3 300,059 - +0.5 300,095 - +0.1 300,095 - -0.0 300,095 - +1.3 300,216 - +1.3 300,383 + GFF1649 0.14 -0.6 300,383 + GFF1649 0.14 +0.5 300,383 + GFF1649 0.14 -0.6 300,383 + GFF1649 0.14 -1.9 300,384 - GFF1649 0.14 -1.4 300,384 - GFF1649 0.14 +0.7 300,384 - GFF1649 0.14 -0.4 300,459 - GFF1649 0.18 +0.8 300,552 - GFF1649 0.23 -0.1 300,669 - GFF1649 0.29 +0.1 300,669 - GFF1649 0.29 +0.5 300,750 - GFF1649 0.33 +0.4 300,750 - GFF1649 0.33 +0.5 300,750 - GFF1649 0.33 +1.0 300,849 + GFF1649 0.39 -0.1 300,875 + GFF1649 0.40 +0.6 300,875 + GFF1649 0.40 +0.3 300,875 + GFF1649 0.40 +0.5 300,876 - GFF1649 0.40 +1.2 300,884 + GFF1649 0.40 -0.6 300,884 + GFF1649 0.40 +1.0 300,884 + GFF1649 0.40 -1.6 300,884 + GFF1649 0.40 +0.3 300,884 + GFF1649 0.40 +0.2 300,884 + GFF1649 0.40 -0.9 300,885 - GFF1649 0.40 +0.7 300,885 - GFF1649 0.40 +0.6 301,106 + GFF1649 0.52 -0.3 301,107 - GFF1649 0.52 -0.5 301,155 - GFF1649 0.55 +0.0 301,160 + GFF1649 0.55 -0.8 301,161 - GFF1649 0.55 +0.4 301,218 - GFF1649 0.58 +0.1 301,218 - GFF1649 0.58 -0.8 301,235 + GFF1649 0.59 +0.3 301,236 - GFF1649 0.59 -0.9 301,236 - GFF1649 0.59 +0.4 301,242 + GFF1649 0.59 +0.3 301,242 + GFF1649 0.59 -0.8 301,244 + GFF1649 0.59 -0.1 301,244 + GFF1649 0.59 -0.4 301,244 + GFF1649 0.59 -0.7 301,244 + GFF1649 0.59 +0.3 301,245 - GFF1649 0.59 +0.3 301,245 - GFF1649 0.59 -0.1 301,245 - GFF1649 0.59 +0.3 301,245 - GFF1649 0.59 +0.7 301,465 + GFF1649 0.71 -0.8 301,465 + GFF1649 0.71 +0.1 301,465 + GFF1649 0.71 +0.8 301,466 - GFF1649 0.71 +1.0 301,475 + GFF1649 0.72 +0.2 301,574 + GFF1649 0.77 -1.4 301,622 + GFF1649 0.79 +0.3 301,622 + GFF1649 0.79 -0.4 301,622 + GFF1649 0.79 -0.4 301,622 + GFF1649 0.79 -0.4 301,622 + GFF1649 0.79 +0.3 301,623 - GFF1649 0.79 -0.6 301,666 + GFF1649 0.82 +0.3 301,667 + GFF1649 0.82 +1.2 301,667 + GFF1649 0.82 +0.0 301,668 - GFF1649 0.82 +1.1 301,668 - GFF1649 0.82 +0.2 301,668 - GFF1649 0.82 -0.9 301,668 - GFF1649 0.82 -0.7 301,668 - GFF1649 0.82 +1.1 301,748 + GFF1649 0.86 +0.2 301,748 + GFF1649 0.86 -0.8 301,748 + GFF1649 0.86 +0.3 301,748 + GFF1649 0.86 +0.1 301,749 - GFF1649 0.86 -0.5 301,749 - GFF1649 0.86 -0.2 301,752 - GFF1649 0.86 +1.2 301,808 + GFF1649 0.89 -0.2 301,809 - GFF1649 0.89 -0.9 301,809 - GFF1649 0.89 -0.3 301,809 - GFF1649 0.89 +0.8 301,835 + +0.5 301,836 - +1.3 302,142 - -0.7 302,144 - +0.9 302,240 - GFF1650 0.12 +0.1 302,240 - GFF1650 0.12 +0.5 302,240 - GFF1650 0.12 +1.2 302,393 - GFF1650 0.20 +1.7 302,420 - GFF1650 0.21 +1.0 302,483 - GFF1650 0.25 +0.6 302,581 + GFF1650 0.30 -0.5 302,663 - GFF1650 0.34 -1.6 302,663 - GFF1650 0.34 +0.7 302,837 - GFF1650 0.43 +0.8 302,837 - GFF1650 0.43 -1.5 302,837 - GFF1650 0.43 +0.4 302,837 - GFF1650 0.43 +0.7 302,975 - GFF1650 0.50 +0.5
Or see this region's nucleotide sequence