Strain Fitness in Xanthobacter sp. DMC5 around GFF1634

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1633 and GFF1634 are separated by 117 nucleotidesGFF1634 and GFF1635 are separated by 237 nucleotides GFF1633 - Peptide chain release factor 3, at 282,599 to 284,206 GFF1633 GFF1634 - Esterase EstA, at 284,324 to 286,216 GFF1634 GFF1635 - hypothetical protein, at 286,454 to 287,416 GFF1635 Position (kb) 284 285 286 287Strain fitness (log2 ratio) -2 -1 0 1at 283.429 kb on - strand, within GFF1633at 283.891 kb on - strand, within GFF1633at 283.891 kb on - strand, within GFF1633at 284.216 kb on - strandat 284.216 kb on - strandat 284.217 kb on + strandat 284.217 kb on + strandat 284.217 kb on + strandat 284.217 kb on + strandat 284.217 kb on + strandat 284.218 kb on - strandat 284.218 kb on - strandat 284.218 kb on - strandat 284.218 kb on - strandat 284.218 kb on - strandat 284.218 kb on - strandat 284.218 kb on - strandat 284.334 kb on + strandat 284.334 kb on + strandat 284.335 kb on - strandat 284.335 kb on - strandat 284.355 kb on + strandat 284.356 kb on - strandat 284.476 kb on - strandat 284.550 kb on + strand, within GFF1634at 284.550 kb on + strand, within GFF1634at 284.550 kb on + strand, within GFF1634at 284.607 kb on + strand, within GFF1634at 284.608 kb on - strand, within GFF1634at 284.608 kb on - strand, within GFF1634at 284.634 kb on + strand, within GFF1634at 284.634 kb on + strand, within GFF1634at 284.634 kb on + strand, within GFF1634at 284.634 kb on + strand, within GFF1634at 284.634 kb on + strand, within GFF1634at 284.634 kb on + strand, within GFF1634at 284.697 kb on + strand, within GFF1634at 284.721 kb on + strand, within GFF1634at 284.721 kb on + strand, within GFF1634at 284.800 kb on - strand, within GFF1634at 284.871 kb on + strand, within GFF1634at 284.872 kb on - strand, within GFF1634at 284.935 kb on - strand, within GFF1634at 284.935 kb on - strand, within GFF1634at 284.964 kb on + strand, within GFF1634at 284.991 kb on + strand, within GFF1634at 284.991 kb on + strand, within GFF1634at 284.992 kb on - strand, within GFF1634at 285.006 kb on + strand, within GFF1634at 285.007 kb on - strand, within GFF1634at 285.063 kb on + strand, within GFF1634at 285.063 kb on + strand, within GFF1634at 285.064 kb on - strand, within GFF1634at 285.120 kb on + strand, within GFF1634at 285.120 kb on + strand, within GFF1634at 285.120 kb on + strand, within GFF1634at 285.120 kb on + strand, within GFF1634at 285.121 kb on - strand, within GFF1634at 285.121 kb on - strand, within GFF1634at 285.121 kb on - strand, within GFF1634at 285.121 kb on - strand, within GFF1634at 285.129 kb on + strand, within GFF1634at 285.129 kb on + strand, within GFF1634at 285.129 kb on + strand, within GFF1634at 285.142 kb on + strand, within GFF1634at 285.142 kb on + strand, within GFF1634at 285.143 kb on - strand, within GFF1634at 285.144 kb on + strand, within GFF1634at 285.160 kb on + strand, within GFF1634at 285.161 kb on - strand, within GFF1634at 285.198 kb on + strand, within GFF1634at 285.198 kb on + strand, within GFF1634at 285.199 kb on - strand, within GFF1634at 285.199 kb on - strand, within GFF1634at 285.216 kb on + strand, within GFF1634at 285.217 kb on - strand, within GFF1634at 285.276 kb on + strand, within GFF1634at 285.277 kb on - strand, within GFF1634at 285.277 kb on - strand, within GFF1634at 285.334 kb on - strand, within GFF1634at 285.334 kb on - strand, within GFF1634at 285.429 kb on + strand, within GFF1634at 285.429 kb on + strand, within GFF1634at 285.430 kb on - strand, within GFF1634at 285.430 kb on - strand, within GFF1634at 285.468 kb on + strand, within GFF1634at 285.468 kb on + strand, within GFF1634at 285.519 kb on + strand, within GFF1634at 285.520 kb on - strand, within GFF1634at 285.534 kb on + strand, within GFF1634at 285.535 kb on - strand, within GFF1634at 285.535 kb on - strand, within GFF1634at 285.627 kb on + strand, within GFF1634at 285.628 kb on - strand, within GFF1634at 285.780 kb on + strand, within GFF1634at 285.822 kb on + strand, within GFF1634at 285.822 kb on + strand, within GFF1634at 285.823 kb on - strand, within GFF1634at 285.823 kb on - strand, within GFF1634at 285.853 kb on + strand, within GFF1634at 285.856 kb on + strand, within GFF1634at 285.856 kb on + strand, within GFF1634at 285.857 kb on - strand, within GFF1634at 285.857 kb on - strand, within GFF1634at 285.857 kb on - strand, within GFF1634at 285.857 kb on - strand, within GFF1634at 285.858 kb on + strand, within GFF1634at 285.858 kb on + strand, within GFF1634at 285.859 kb on - strand, within GFF1634at 285.859 kb on - strand, within GFF1634at 285.859 kb on - strand, within GFF1634at 285.859 kb on - strand, within GFF1634at 285.864 kb on + strand, within GFF1634at 285.865 kb on - strand, within GFF1634at 285.921 kb on + strand, within GFF1634at 285.922 kb on - strand, within GFF1634at 285.975 kb on + strand, within GFF1634at 285.975 kb on + strand, within GFF1634at 285.996 kb on + strand, within GFF1634at 285.996 kb on + strand, within GFF1634at 286.080 kb on + strandat 286.080 kb on + strandat 286.081 kb on - strandat 286.081 kb on - strandat 286.081 kb on - strandat 286.083 kb on + strandat 286.083 kb on + strandat 286.083 kb on + strandat 286.084 kb on - strandat 286.084 kb on - strandat 286.084 kb on - strandat 286.119 kb on + strandat 286.220 kb on - strandat 286.464 kb on + strandat 286.465 kb on - strandat 286.600 kb on + strand, within GFF1635at 286.601 kb on - strand, within GFF1635at 286.719 kb on + strand, within GFF1635at 286.719 kb on + strand, within GFF1635at 286.720 kb on - strand, within GFF1635at 286.836 kb on + strand, within GFF1635at 286.872 kb on + strand, within GFF1635at 286.873 kb on - strand, within GFF1635at 287.019 kb on + strand, within GFF1635at 287.019 kb on + strand, within GFF1635at 287.019 kb on + strand, within GFF1635at 287.020 kb on - strand, within GFF1635at 287.020 kb on - strand, within GFF1635at 287.020 kb on - strand, within GFF1635at 287.020 kb on - strand, within GFF1635

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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283,429 - GFF1633 0.52 +0.2
283,891 - GFF1633 0.80 +1.6
283,891 - GFF1633 0.80 -0.8
284,216 - -0.4
284,216 - +0.4
284,217 + -0.2
284,217 + -0.3
284,217 + -0.9
284,217 + -0.9
284,217 + +0.3
284,218 - +0.1
284,218 - -0.2
284,218 - -0.6
284,218 - -0.7
284,218 - +0.3
284,218 - -0.9
284,218 - +0.2
284,334 + -0.4
284,334 + -0.6
284,335 - +0.5
284,335 - +0.0
284,355 + +0.8
284,356 - -0.7
284,476 - -0.2
284,550 + GFF1634 0.12 -1.2
284,550 + GFF1634 0.12 +0.2
284,550 + GFF1634 0.12 -1.5
284,607 + GFF1634 0.15 -0.6
284,608 - GFF1634 0.15 -0.3
284,608 - GFF1634 0.15 +0.8
284,634 + GFF1634 0.16 -0.1
284,634 + GFF1634 0.16 +0.5
284,634 + GFF1634 0.16 -0.1
284,634 + GFF1634 0.16 -0.3
284,634 + GFF1634 0.16 +0.3
284,634 + GFF1634 0.16 -0.5
284,697 + GFF1634 0.20 -0.4
284,721 + GFF1634 0.21 -0.5
284,721 + GFF1634 0.21 -0.5
284,800 - GFF1634 0.25 -0.4
284,871 + GFF1634 0.29 -1.2
284,872 - GFF1634 0.29 +0.8
284,935 - GFF1634 0.32 +0.0
284,935 - GFF1634 0.32 -0.6
284,964 + GFF1634 0.34 -0.2
284,991 + GFF1634 0.35 +0.2
284,991 + GFF1634 0.35 -0.4
284,992 - GFF1634 0.35 -0.8
285,006 + GFF1634 0.36 +0.6
285,007 - GFF1634 0.36 -0.7
285,063 + GFF1634 0.39 -0.2
285,063 + GFF1634 0.39 -0.4
285,064 - GFF1634 0.39 -0.5
285,120 + GFF1634 0.42 -0.5
285,120 + GFF1634 0.42 +0.5
285,120 + GFF1634 0.42 -0.8
285,120 + GFF1634 0.42 +0.9
285,121 - GFF1634 0.42 +1.3
285,121 - GFF1634 0.42 +0.2
285,121 - GFF1634 0.42 +0.2
285,121 - GFF1634 0.42 -0.5
285,129 + GFF1634 0.43 +1.6
285,129 + GFF1634 0.43 +0.2
285,129 + GFF1634 0.43 +0.3
285,142 + GFF1634 0.43 +1.3
285,142 + GFF1634 0.43 +0.9
285,143 - GFF1634 0.43 +0.5
285,144 + GFF1634 0.43 +0.6
285,160 + GFF1634 0.44 -0.3
285,161 - GFF1634 0.44 -0.1
285,198 + GFF1634 0.46 -0.2
285,198 + GFF1634 0.46 +0.5
285,199 - GFF1634 0.46 +0.2
285,199 - GFF1634 0.46 +0.8
285,216 + GFF1634 0.47 +0.2
285,217 - GFF1634 0.47 +0.8
285,276 + GFF1634 0.50 +0.9
285,277 - GFF1634 0.50 -0.1
285,277 - GFF1634 0.50 +0.1
285,334 - GFF1634 0.53 -1.3
285,334 - GFF1634 0.53 -0.4
285,429 + GFF1634 0.58 -0.1
285,429 + GFF1634 0.58 +0.2
285,430 - GFF1634 0.58 -0.2
285,430 - GFF1634 0.58 -1.4
285,468 + GFF1634 0.60 -2.1
285,468 + GFF1634 0.60 +1.2
285,519 + GFF1634 0.63 +0.2
285,520 - GFF1634 0.63 +1.0
285,534 + GFF1634 0.64 +0.1
285,535 - GFF1634 0.64 +0.7
285,535 - GFF1634 0.64 +0.2
285,627 + GFF1634 0.69 +0.7
285,628 - GFF1634 0.69 +0.7
285,780 + GFF1634 0.77 +0.2
285,822 + GFF1634 0.79 +0.1
285,822 + GFF1634 0.79 -0.8
285,823 - GFF1634 0.79 +0.2
285,823 - GFF1634 0.79 +0.8
285,853 + GFF1634 0.81 +0.6
285,856 + GFF1634 0.81 +0.6
285,856 + GFF1634 0.81 -0.2
285,857 - GFF1634 0.81 -1.0
285,857 - GFF1634 0.81 +0.5
285,857 - GFF1634 0.81 +1.0
285,857 - GFF1634 0.81 -1.0
285,858 + GFF1634 0.81 -0.1
285,858 + GFF1634 0.81 +0.2
285,859 - GFF1634 0.81 -0.2
285,859 - GFF1634 0.81 -0.7
285,859 - GFF1634 0.81 +0.5
285,859 - GFF1634 0.81 -0.1
285,864 + GFF1634 0.81 -0.3
285,865 - GFF1634 0.81 -1.8
285,921 + GFF1634 0.84 -0.7
285,922 - GFF1634 0.84 +0.5
285,975 + GFF1634 0.87 +0.3
285,975 + GFF1634 0.87 -0.4
285,996 + GFF1634 0.88 +0.1
285,996 + GFF1634 0.88 +0.4
286,080 + -0.7
286,080 + -0.2
286,081 - -0.5
286,081 - +0.2
286,081 - +0.3
286,083 + +0.1
286,083 + -0.4
286,083 + -0.2
286,084 - -0.6
286,084 - -0.9
286,084 - +0.5
286,119 + +0.5
286,220 - +0.2
286,464 + -0.2
286,465 - -0.2
286,600 + GFF1635 0.15 -0.8
286,601 - GFF1635 0.15 +0.1
286,719 + GFF1635 0.28 -0.5
286,719 + GFF1635 0.28 +0.8
286,720 - GFF1635 0.28 +0.2
286,836 + GFF1635 0.40 -0.6
286,872 + GFF1635 0.43 -0.5
286,873 - GFF1635 0.44 +0.0
287,019 + GFF1635 0.59 -0.1
287,019 + GFF1635 0.59 +1.3
287,019 + GFF1635 0.59 +0.7
287,020 - GFF1635 0.59 +1.2
287,020 - GFF1635 0.59 +0.3
287,020 - GFF1635 0.59 -0.5
287,020 - GFF1635 0.59 +0.0

Or see this region's nucleotide sequence