Strain Fitness in Xanthobacter sp. DMC5 around GFF1620

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1619 and GFF1620 are separated by 110 nucleotidesGFF1620 and GFF1621 are separated by 603 nucleotides GFF1619 - hypothetical protein, at 267,126 to 268,499 GFF1619 GFF1620 - hypothetical protein, at 268,610 to 269,170 GFF1620 GFF1621 - hypothetical protein, at 269,774 to 271,744 GFF1621 Position (kb) 268 269 270Strain fitness (log2 ratio) -2 -1 0 1 2at 267.654 kb on + strand, within GFF1619at 267.654 kb on + strand, within GFF1619at 267.654 kb on + strand, within GFF1619at 267.715 kb on - strand, within GFF1619at 267.715 kb on - strand, within GFF1619at 267.715 kb on - strand, within GFF1619at 267.752 kb on + strand, within GFF1619at 267.753 kb on - strand, within GFF1619at 267.753 kb on - strand, within GFF1619at 267.978 kb on + strand, within GFF1619at 267.978 kb on + strand, within GFF1619at 267.978 kb on + strand, within GFF1619at 268.067 kb on + strand, within GFF1619at 268.068 kb on - strand, within GFF1619at 268.211 kb on + strand, within GFF1619at 268.211 kb on + strand, within GFF1619at 268.245 kb on + strand, within GFF1619at 268.245 kb on + strand, within GFF1619at 268.245 kb on + strand, within GFF1619at 268.245 kb on + strand, within GFF1619at 268.246 kb on - strand, within GFF1619at 268.246 kb on - strand, within GFF1619at 268.246 kb on - strand, within GFF1619at 268.246 kb on - strand, within GFF1619at 268.246 kb on - strand, within GFF1619at 268.267 kb on + strand, within GFF1619at 268.267 kb on + strand, within GFF1619at 268.268 kb on - strand, within GFF1619at 268.268 kb on - strand, within GFF1619at 268.384 kb on + strandat 268.384 kb on + strandat 268.385 kb on - strandat 268.385 kb on - strandat 268.385 kb on - strandat 268.447 kb on + strandat 268.531 kb on + strandat 268.531 kb on + strandat 268.531 kb on + strandat 268.531 kb on + strandat 268.531 kb on + strandat 268.532 kb on - strandat 268.583 kb on + strandat 268.591 kb on - strandat 268.605 kb on - strandat 268.656 kb on - strandat 268.670 kb on - strand, within GFF1620at 268.671 kb on + strand, within GFF1620at 268.671 kb on + strand, within GFF1620at 268.672 kb on - strand, within GFF1620at 268.675 kb on - strand, within GFF1620at 268.825 kb on - strand, within GFF1620at 268.827 kb on - strand, within GFF1620at 268.873 kb on + strand, within GFF1620at 268.873 kb on + strand, within GFF1620at 268.889 kb on + strand, within GFF1620at 268.889 kb on + strand, within GFF1620at 268.890 kb on - strand, within GFF1620at 268.890 kb on - strand, within GFF1620at 268.965 kb on - strand, within GFF1620at 269.102 kb on + strand, within GFF1620at 269.168 kb on + strandat 269.168 kb on + strandat 269.205 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.298 kb on - strandat 269.298 kb on - strandat 269.325 kb on + strandat 269.326 kb on - strandat 269.326 kb on - strandat 269.326 kb on - strandat 269.326 kb on - strandat 269.326 kb on - strandat 269.468 kb on - strandat 269.565 kb on + strandat 269.565 kb on + strandat 269.565 kb on + strandat 269.565 kb on + strandat 269.565 kb on + strandat 269.566 kb on - strandat 269.566 kb on - strandat 269.566 kb on - strandat 269.566 kb on - strandat 269.566 kb on - strandat 269.566 kb on - strandat 269.566 kb on - strandat 269.566 kb on - strandat 269.662 kb on + strandat 269.663 kb on - strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.681 kb on + strandat 269.751 kb on - strandat 269.803 kb on + strandat 269.804 kb on - strandat 269.804 kb on - strandat 269.851 kb on - strandat 269.943 kb on + strandat 269.943 kb on + strandat 269.943 kb on + strandat 269.943 kb on + strandat 269.944 kb on - strandat 269.944 kb on - strandat 269.944 kb on - strandat 269.944 kb on - strandat 269.944 kb on - strandat 270.041 kb on - strand, within GFF1621at 270.041 kb on - strand, within GFF1621at 270.062 kb on + strand, within GFF1621at 270.063 kb on - strand, within GFF1621

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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267,654 + GFF1619 0.38 -0.7
267,654 + GFF1619 0.38 -1.0
267,654 + GFF1619 0.38 -1.1
267,715 - GFF1619 0.43 -2.7
267,715 - GFF1619 0.43 -0.1
267,715 - GFF1619 0.43 -1.8
267,752 + GFF1619 0.46 -0.2
267,753 - GFF1619 0.46 +0.4
267,753 - GFF1619 0.46 +0.6
267,978 + GFF1619 0.62 +0.0
267,978 + GFF1619 0.62 +0.0
267,978 + GFF1619 0.62 +0.2
268,067 + GFF1619 0.68 -0.6
268,068 - GFF1619 0.69 +1.1
268,211 + GFF1619 0.79 -0.6
268,211 + GFF1619 0.79 -0.2
268,245 + GFF1619 0.81 -1.0
268,245 + GFF1619 0.81 +0.5
268,245 + GFF1619 0.81 +1.6
268,245 + GFF1619 0.81 +0.1
268,246 - GFF1619 0.82 -0.1
268,246 - GFF1619 0.82 -0.0
268,246 - GFF1619 0.82 -0.5
268,246 - GFF1619 0.82 -0.4
268,246 - GFF1619 0.82 +0.5
268,267 + GFF1619 0.83 +0.3
268,267 + GFF1619 0.83 -0.4
268,268 - GFF1619 0.83 +0.0
268,268 - GFF1619 0.83 +1.5
268,384 + +0.2
268,384 + +0.5
268,385 - -1.5
268,385 - +0.2
268,385 - +0.8
268,447 + -0.2
268,531 + +0.9
268,531 + -0.6
268,531 + -0.2
268,531 + +0.6
268,531 + -0.3
268,532 - +0.4
268,583 + -0.4
268,591 - +0.9
268,605 - +1.0
268,656 - +0.1
268,670 - GFF1620 0.11 -0.6
268,671 + GFF1620 0.11 +0.4
268,671 + GFF1620 0.11 -0.4
268,672 - GFF1620 0.11 -1.9
268,675 - GFF1620 0.12 +0.3
268,825 - GFF1620 0.38 +1.3
268,827 - GFF1620 0.39 +0.0
268,873 + GFF1620 0.47 +0.5
268,873 + GFF1620 0.47 +1.3
268,889 + GFF1620 0.50 -1.2
268,889 + GFF1620 0.50 +0.0
268,890 - GFF1620 0.50 -2.1
268,890 - GFF1620 0.50 +2.0
268,965 - GFF1620 0.63 -0.1
269,102 + GFF1620 0.88 +1.5
269,168 + -0.9
269,168 + +0.6
269,205 + +0.5
269,297 + -0.2
269,297 + +0.2
269,298 - +1.7
269,298 - +0.1
269,325 + -1.0
269,326 - -1.4
269,326 - -0.2
269,326 - +0.3
269,326 - -0.4
269,326 - +0.6
269,468 - -0.9
269,565 + -0.9
269,565 + +0.3
269,565 + -1.9
269,565 + -1.2
269,565 + +0.0
269,566 - +0.8
269,566 - -0.4
269,566 - +0.0
269,566 - +0.4
269,566 - -1.2
269,566 - -1.0
269,566 - -0.4
269,566 - +0.9
269,662 + -0.3
269,663 - -0.2
269,681 + +0.0
269,681 + -1.0
269,681 + +0.0
269,681 + +0.2
269,751 - -0.9
269,803 + -0.2
269,804 - +0.3
269,804 - +1.3
269,851 - -1.1
269,943 + +0.8
269,943 + -0.1
269,943 + -1.2
269,943 + -0.8
269,944 - +0.9
269,944 - -1.6
269,944 - -0.3
269,944 - +0.4
269,944 - +2.0
270,041 - GFF1621 0.14 -1.4
270,041 - GFF1621 0.14 +0.2
270,062 + GFF1621 0.15 +0.3
270,063 - GFF1621 0.15 -0.8

Or see this region's nucleotide sequence