Strain Fitness in Xanthobacter sp. DMC5 around GFF1599

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1598 and GFF1599 are separated by 188 nucleotidesGFF1599 and GFF1600 overlap by 8 nucleotidesGFF1600 and GFF1601 are separated by 54 nucleotides GFF1598 - 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, at 248,432 to 249,307 GFF1598 GFF1599 - hypothetical protein, at 249,496 to 249,891 GFF1599 GFF1600 - 2-(hydroxymethyl)glutarate dehydrogenase, at 249,884 to 250,780 GFF1600 GFF1601 - hypothetical protein, at 250,835 to 252,187 GFF1601 Position (kb) 249 250Strain fitness (log2 ratio) -2 -1 0 1 2at 248.529 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.637 kb on + strand, within GFF1598at 248.638 kb on - strand, within GFF1598at 248.638 kb on - strand, within GFF1598at 248.638 kb on - strand, within GFF1598at 248.703 kb on + strand, within GFF1598at 248.704 kb on - strand, within GFF1598at 248.704 kb on - strand, within GFF1598at 248.753 kb on + strand, within GFF1598at 248.754 kb on - strand, within GFF1598at 248.754 kb on - strand, within GFF1598at 248.809 kb on + strand, within GFF1598at 248.810 kb on - strand, within GFF1598at 248.844 kb on + strand, within GFF1598at 248.845 kb on - strand, within GFF1598at 248.963 kb on + strand, within GFF1598at 248.963 kb on + strand, within GFF1598at 248.964 kb on - strand, within GFF1598at 249.037 kb on + strand, within GFF1598at 249.037 kb on + strand, within GFF1598at 249.038 kb on - strand, within GFF1598at 249.105 kb on + strand, within GFF1598at 249.270 kb on + strandat 249.270 kb on + strandat 249.409 kb on - strandat 249.438 kb on - strandat 249.438 kb on - strandat 249.462 kb on - strandat 249.474 kb on + strandat 249.475 kb on - strandat 249.475 kb on - strandat 249.495 kb on + strandat 249.496 kb on - strandat 249.496 kb on - strandat 249.496 kb on - strandat 249.571 kb on + strand, within GFF1599at 249.571 kb on + strand, within GFF1599at 249.572 kb on - strand, within GFF1599at 249.572 kb on - strand, within GFF1599at 249.572 kb on - strand, within GFF1599at 249.572 kb on - strand, within GFF1599at 249.797 kb on + strand, within GFF1599at 249.817 kb on + strand, within GFF1599at 249.817 kb on + strand, within GFF1599at 249.817 kb on + strand, within GFF1599at 249.817 kb on + strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.818 kb on - strand, within GFF1599at 249.974 kb on + strand, within GFF1600at 249.975 kb on - strand, within GFF1600at 249.975 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.241 kb on - strand, within GFF1600at 250.424 kb on + strand, within GFF1600at 250.424 kb on + strand, within GFF1600at 250.424 kb on + strand, within GFF1600at 250.424 kb on + strand, within GFF1600at 250.425 kb on - strand, within GFF1600at 250.425 kb on - strand, within GFF1600at 250.425 kb on - strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.583 kb on + strand, within GFF1600at 250.584 kb on - strand, within GFF1600at 250.584 kb on - strand, within GFF1600at 250.584 kb on - strand, within GFF1600at 250.584 kb on - strand, within GFF1600at 250.584 kb on - strand, within GFF1600at 250.584 kb on - strand, within GFF1600at 250.751 kb on + strandat 250.751 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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248,529 + GFF1598 0.11 -1.5
248,637 + GFF1598 0.23 +0.1
248,637 + GFF1598 0.23 +0.1
248,637 + GFF1598 0.23 -0.0
248,637 + GFF1598 0.23 +0.4
248,637 + GFF1598 0.23 +0.8
248,637 + GFF1598 0.23 -0.1
248,638 - GFF1598 0.24 -0.4
248,638 - GFF1598 0.24 -0.2
248,638 - GFF1598 0.24 -0.7
248,703 + GFF1598 0.31 -0.9
248,704 - GFF1598 0.31 +0.8
248,704 - GFF1598 0.31 +0.0
248,753 + GFF1598 0.37 +1.0
248,754 - GFF1598 0.37 -0.6
248,754 - GFF1598 0.37 +0.8
248,809 + GFF1598 0.43 +1.3
248,810 - GFF1598 0.43 -0.6
248,844 + GFF1598 0.47 -0.3
248,845 - GFF1598 0.47 +0.2
248,963 + GFF1598 0.61 +0.5
248,963 + GFF1598 0.61 +0.3
248,964 - GFF1598 0.61 +1.1
249,037 + GFF1598 0.69 -0.1
249,037 + GFF1598 0.69 +0.1
249,038 - GFF1598 0.69 +0.5
249,105 + GFF1598 0.77 +1.3
249,270 + +0.8
249,270 + -0.8
249,409 - -0.2
249,438 - +0.7
249,438 - +0.1
249,462 - +0.8
249,474 + +0.5
249,475 - +0.2
249,475 - -0.3
249,495 + -0.1
249,496 - -0.4
249,496 - -0.2
249,496 - -0.5
249,571 + GFF1599 0.19 +0.4
249,571 + GFF1599 0.19 +0.4
249,572 - GFF1599 0.19 -0.4
249,572 - GFF1599 0.19 +1.9
249,572 - GFF1599 0.19 -2.2
249,572 - GFF1599 0.19 +1.1
249,797 + GFF1599 0.76 -0.7
249,817 + GFF1599 0.81 -0.1
249,817 + GFF1599 0.81 +0.3
249,817 + GFF1599 0.81 -0.1
249,817 + GFF1599 0.81 +0.8
249,818 - GFF1599 0.81 +1.0
249,818 - GFF1599 0.81 -0.3
249,818 - GFF1599 0.81 -0.5
249,818 - GFF1599 0.81 +0.3
249,818 - GFF1599 0.81 +0.8
249,818 - GFF1599 0.81 -1.1
249,818 - GFF1599 0.81 -0.3
249,818 - GFF1599 0.81 +0.3
249,974 + GFF1600 0.10 +0.1
249,975 - GFF1600 0.10 +0.3
249,975 - GFF1600 0.10 -0.2
250,241 - GFF1600 0.40 -0.5
250,241 - GFF1600 0.40 -1.3
250,241 - GFF1600 0.40 +1.3
250,241 - GFF1600 0.40 -0.9
250,241 - GFF1600 0.40 +0.9
250,241 - GFF1600 0.40 +0.5
250,424 + GFF1600 0.60 +0.7
250,424 + GFF1600 0.60 +0.2
250,424 + GFF1600 0.60 +1.6
250,424 + GFF1600 0.60 +1.0
250,425 - GFF1600 0.60 +1.6
250,425 - GFF1600 0.60 +1.1
250,425 - GFF1600 0.60 -0.3
250,583 + GFF1600 0.78 +0.5
250,583 + GFF1600 0.78 -0.2
250,583 + GFF1600 0.78 +0.2
250,583 + GFF1600 0.78 -0.1
250,583 + GFF1600 0.78 +0.6
250,583 + GFF1600 0.78 -0.4
250,583 + GFF1600 0.78 +0.4
250,583 + GFF1600 0.78 +0.3
250,584 - GFF1600 0.78 -0.9
250,584 - GFF1600 0.78 +0.3
250,584 - GFF1600 0.78 -0.6
250,584 - GFF1600 0.78 +0.7
250,584 - GFF1600 0.78 +0.9
250,584 - GFF1600 0.78 +0.1
250,751 + -0.2
250,751 + +0.8

Or see this region's nucleotide sequence