Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1574 and GFF1575 overlap by 1 nucleotides GFF1575 and GFF1576 are separated by 29 nucleotides GFF1576 and GFF1577 are separated by 19 nucleotides
GFF1574 - hypothetical protein, at 218,967 to 220,853
GFF1574
GFF1575 - hypothetical protein, at 220,853 to 222,433
GFF1575
GFF1576 - hypothetical protein, at 222,463 to 223,137
GFF1576
GFF1577 - Glycerol dehydrogenase, at 223,157 to 224,245
GFF1577
Position (kb) 220
221
222
223 Strain fitness (log2 ratio) -2
-1
0
1 at 219.854 kb on - strand, within GFF1574 at 219.854 kb on - strand, within GFF1574 at 219.854 kb on - strand, within GFF1574 at 219.854 kb on - strand, within GFF1574 at 219.981 kb on + strand, within GFF1574 at 219.982 kb on - strand, within GFF1574 at 220.026 kb on + strand, within GFF1574 at 220.036 kb on - strand, within GFF1574 at 220.036 kb on - strand, within GFF1574 at 220.065 kb on - strand, within GFF1574 at 220.065 kb on - strand, within GFF1574 at 220.065 kb on - strand, within GFF1574 at 220.083 kb on + strand, within GFF1574 at 220.083 kb on + strand, within GFF1574 at 220.083 kb on + strand, within GFF1574 at 220.084 kb on - strand, within GFF1574 at 220.410 kb on + strand, within GFF1574 at 220.410 kb on + strand, within GFF1574 at 220.410 kb on + strand, within GFF1574 at 220.411 kb on - strand, within GFF1574 at 220.674 kb on - strand at 220.674 kb on - strand at 221.153 kb on + strand, within GFF1575 at 221.154 kb on - strand, within GFF1575 at 221.154 kb on - strand, within GFF1575 at 221.154 kb on - strand, within GFF1575 at 221.264 kb on + strand, within GFF1575 at 221.264 kb on + strand, within GFF1575 at 221.264 kb on + strand, within GFF1575 at 221.264 kb on + strand, within GFF1575 at 221.265 kb on - strand, within GFF1575 at 221.265 kb on - strand, within GFF1575 at 221.265 kb on - strand, within GFF1575 at 221.519 kb on + strand, within GFF1575 at 221.520 kb on - strand, within GFF1575 at 221.526 kb on + strand, within GFF1575 at 221.527 kb on - strand, within GFF1575 at 221.528 kb on + strand, within GFF1575 at 221.587 kb on + strand, within GFF1575 at 221.588 kb on - strand, within GFF1575 at 221.588 kb on - strand, within GFF1575 at 221.632 kb on + strand, within GFF1575 at 221.632 kb on + strand, within GFF1575 at 221.717 kb on + strand, within GFF1575 at 221.718 kb on - strand, within GFF1575 at 221.718 kb on - strand, within GFF1575 at 221.936 kb on + strand, within GFF1575 at 221.936 kb on + strand, within GFF1575 at 221.936 kb on + strand, within GFF1575 at 221.936 kb on + strand, within GFF1575 at 221.937 kb on - strand, within GFF1575 at 222.195 kb on - strand, within GFF1575 at 222.432 kb on - strand at 222.820 kb on + strand, within GFF1576 at 222.820 kb on + strand, within GFF1576 at 222.821 kb on - strand, within GFF1576 at 222.821 kb on - strand, within GFF1576 at 222.821 kb on - strand, within GFF1576 at 222.949 kb on + strand, within GFF1576 at 222.950 kb on - strand, within GFF1576 at 223.087 kb on + strand at 223.214 kb on - strand at 223.214 kb on - strand at 223.341 kb on + strand, within GFF1577 at 223.341 kb on + strand, within GFF1577 at 223.342 kb on - strand, within GFF1577 at 223.342 kb on - strand, within GFF1577 at 223.410 kb on + strand, within GFF1577 at 223.410 kb on + strand, within GFF1577
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 219,854 - GFF1574 0.47 -0.7 219,854 - GFF1574 0.47 -1.6 219,854 - GFF1574 0.47 +0.8 219,854 - GFF1574 0.47 -1.0 219,981 + GFF1574 0.54 +0.0 219,982 - GFF1574 0.54 -1.2 220,026 + GFF1574 0.56 -1.4 220,036 - GFF1574 0.57 +1.1 220,036 - GFF1574 0.57 +0.2 220,065 - GFF1574 0.58 +0.5 220,065 - GFF1574 0.58 -0.9 220,065 - GFF1574 0.58 -0.6 220,083 + GFF1574 0.59 +0.3 220,083 + GFF1574 0.59 +0.8 220,083 + GFF1574 0.59 -0.4 220,084 - GFF1574 0.59 -0.7 220,410 + GFF1574 0.76 +0.5 220,410 + GFF1574 0.76 +0.2 220,410 + GFF1574 0.76 -0.1 220,411 - GFF1574 0.77 +0.7 220,674 - +0.3 220,674 - -0.1 221,153 + GFF1575 0.19 +0.3 221,154 - GFF1575 0.19 +0.4 221,154 - GFF1575 0.19 -0.5 221,154 - GFF1575 0.19 -0.3 221,264 + GFF1575 0.26 +0.4 221,264 + GFF1575 0.26 +0.3 221,264 + GFF1575 0.26 +0.1 221,264 + GFF1575 0.26 -0.4 221,265 - GFF1575 0.26 -0.4 221,265 - GFF1575 0.26 +0.4 221,265 - GFF1575 0.26 +0.4 221,519 + GFF1575 0.42 +0.0 221,520 - GFF1575 0.42 -0.9 221,526 + GFF1575 0.43 +0.1 221,527 - GFF1575 0.43 -0.4 221,528 + GFF1575 0.43 -0.5 221,587 + GFF1575 0.46 +0.3 221,588 - GFF1575 0.46 -0.2 221,588 - GFF1575 0.46 +1.0 221,632 + GFF1575 0.49 -0.2 221,632 + GFF1575 0.49 -2.3 221,717 + GFF1575 0.55 -0.9 221,718 - GFF1575 0.55 -1.6 221,718 - GFF1575 0.55 -0.7 221,936 + GFF1575 0.69 -0.1 221,936 + GFF1575 0.69 -1.3 221,936 + GFF1575 0.69 -0.7 221,936 + GFF1575 0.69 -1.4 221,937 - GFF1575 0.69 -0.5 222,195 - GFF1575 0.85 +0.8 222,432 - +0.4 222,820 + GFF1576 0.53 -0.0 222,820 + GFF1576 0.53 -0.8 222,821 - GFF1576 0.53 -0.1 222,821 - GFF1576 0.53 +0.1 222,821 - GFF1576 0.53 +0.2 222,949 + GFF1576 0.72 +0.1 222,950 - GFF1576 0.72 -1.1 223,087 + +0.8 223,214 - -0.4 223,214 - +0.2 223,341 + GFF1577 0.17 +0.8 223,341 + GFF1577 0.17 +0.2 223,342 - GFF1577 0.17 +0.3 223,342 - GFF1577 0.17 -0.2 223,410 + GFF1577 0.23 +0.4 223,410 + GFF1577 0.23 +0.3
Or see this region's nucleotide sequence